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BioLiP
>protein
FTFASTQVSGSVTVNSVQLLAEEIQIRIEAN

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2w6i:H 31 31 1.0000 1.0000 1.0000 2.13e-15
2 5imi:A 306 30 0.3226 0.0327 0.3333 1.8 3bnx:A, 3bnx:B, 3bnx:C, 3bnx:D, 3bny:A, 3bny:B, 3bny:C, 3bny:D, 3cke:A, 3cke:B, 3cke:C, 5imi:B, 5imi:C, 5imi:D, 5imn:A, 5imn:B, 5imn:C, 5imn:D, 5imp:A, 5imp:B, 5imp:C, 5imp:D, 5in8:A, 5in8:B, 5in8:C, 5in8:D, 5ivg:A, 5ivg:B, 5ivg:C, 5ivg:D, 4kux:A, 4kux:B, 4kux:C, 4kux:D, 4kvd:A, 4kvd:B, 4kvd:C, 4kvd:D, 4kvi:A, 4kvi:B, 4kvi:C, 4kvi:D, 4kvw:A, 4kvw:B, 4kvw:C, 4kvw:D, 4kvy:A, 4kvy:B, 4kvy:C, 4kvy:D, 4kwd:A, 4kwd:B, 4kwd:C, 4kwd:D, 2oa6:D
3 2jdi:H 88 9 0.2903 0.1023 1.0000 9.0 2ck3:H, 2w6j:H
4 4qpn:A 203 22 0.2903 0.0443 0.4091 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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