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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FSQKVTSITKPILVNAIHSLFSEYFHREKVLNVADLGCAAGPNPFSVILTVKESLERKCKELNCQPAELQVYLNDLPGND
FNSLFKDLSGVLRTCFVMGAPGSFYGRLFPRSCLHLVHSCYSVHWLSQVPKGLTGLPLNKGKINISKTSPPVVEAAYLAQ
FKEDFTLLLKSRAEEMVQNGRMVLILNGRQASDPWGKESCYHWEVLAEAISEMVSQGLVDEEKLDSFNVPCYAPSQEEVQ
DIVDKVGSFAVEHIETFTLPFANDQESDTRVKGEQLAKNIRSFTESIISYEFGKEITEKVYHKLTQIVVKDMASRPPTNT
TVVVVLSRTM

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8t2g:A 333 333 0.9970 0.9880 0.9880 0.0 8t2g:B, 8uzd:A, 8uzd:B
2 6lyh:A 358 335 0.5970 0.5503 0.5881 3.50e-146 6lyh:B, 6lyh:C, 6lyh:D, 6lyh:E, 6lyh:F, 6lyh:G, 6lyh:H
3 1m6e:X 359 335 0.4152 0.3816 0.4090 2.12e-84
4 2efj:A 348 337 0.3727 0.3534 0.3650 1.71e-68
5 2eg5:E 346 331 0.3788 0.3613 0.3776 6.21e-66 2eg5:A, 2eg5:C, 2eg5:G
6 6c8r:A 358 316 0.3182 0.2933 0.3323 9.06e-54 6c8r:B, 6c8s:A, 6c8s:B
7 3b5i:A 344 290 0.2818 0.2703 0.3207 4.64e-51 3b5i:B
8 5f2k:A 358 235 0.1697 0.1564 0.2383 3.06e-13 5f2k:B, 5f2n:A, 5f2n:B, 5f2o:A, 5f2o:B
9 3ojf:A 257 141 0.1121 0.1440 0.2624 0.72 3ojf:D, 3ojf:B, 3ojf:C, 2qio:A, 2qio:B, 2qio:C, 2qio:D, 5ycr:A, 5ycr:B, 5ycr:C, 5ycr:D, 5ycs:A, 5ycs:B, 5ycs:C, 5ycs:D
10 2hru:A 581 143 0.1000 0.0568 0.2308 2.0 2hry:A, 2hs0:A
11 2vbc:A 600 78 0.0667 0.0367 0.2821 2.4 2jlr:A, 2jls:A, 2jlu:A, 2jlu:B, 2jlv:A, 2jlv:B, 2jlw:A, 2jlw:B, 2jlx:A, 2jlx:B, 2jly:A, 2jly:B, 2jlz:A, 2jlz:B, 2whx:A, 2wzq:A, 5xc6:A, 5xc6:B, 5yvj:B
12 6wcd:A 314 26 0.0394 0.0414 0.5000 5.5
13 4xac:A 245 97 0.0697 0.0939 0.2371 6.1
14 4xzu:A 213 52 0.0576 0.0892 0.3654 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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