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BioLiP
>protein
FSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR
RLKSKGQIP

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1bh9:B 89 89 1.0000 1.0000 1.0000 1.62e-62
2 5xq3:A 901 20 0.1124 0.0111 0.5000 3.9 5xq3:B, 5xqg:A, 5xqg:B, 5xqg:C, 5xqg:D, 5xqg:E, 5xqg:F, 5xqg:G, 5xqg:H, 5xqj:A, 5xqj:B, 5xqj:C, 5xqj:D, 5xqj:E, 5xqj:F, 5xqj:G, 5xqj:H, 5xqo:A, 5xqo:B
3 7bur:B 389 54 0.1461 0.0334 0.2407 5.8 7bur:A, 8jrd:A, 8jrd:B
4 6c7n:A 553 31 0.1124 0.0181 0.3226 6.8 6c7n:B, 6c7n:C
5 5ifw:B 702 52 0.1685 0.0214 0.2885 6.9
6 1a7w:A 68 67 0.1910 0.2500 0.2537 8.2 5t5k:A, 5t5k:B, 5t5k:C, 5t5k:D, 5t5k:E, 5t5k:F
7 6d50:B 840 24 0.1236 0.0131 0.4583 9.9 6d50:A, 6nzg:A, 6nzg:B, 5uj6:A, 5uj6:B
8 1chw:A 389 43 0.1124 0.0257 0.2326 10.0 1bq6:A, 1cgk:A, 1cgz:A, 1chw:B, 1cml:A, 1d6h:A, 1u0w:A, 1u0w:B, 1u0w:C, 1u0w:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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