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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FSDDQLVSMSVRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLEVGRLAKE
RDLYKEKYEKLA

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4eot:A 92 91 0.9891 0.9891 1.0000 3.96e-60 4eot:B
2 2wty:B 97 92 0.8261 0.7835 0.8261 4.50e-48 4auw:A, 4auw:B, 4auw:E, 4auw:F, 2wt7:B, 2wty:A
3 7x5e:E 101 91 0.5652 0.5149 0.5714 1.11e-30 3a5t:A, 3a5t:B, 7x5e:A, 7x5f:A, 7x5f:E, 7x5g:A, 7x5g:E
4 7x5e:B 106 77 0.2065 0.1792 0.2468 1.2 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
5 2wt7:A 63 46 0.1522 0.2222 0.3043 1.3 1a02:F, 1fos:E, 1fos:G, 1s9k:D
6 8tri:B 454 27 0.1413 0.0286 0.4815 1.6 7suu:A, 7suu:B, 8tri:A
7 6evq:A 70 27 0.1522 0.2000 0.5185 1.7 6evq:B, 3gjo:A, 3gjo:B, 3gjo:C, 3gjo:D, 5n74:A, 5n74:B, 5n74:C, 5n74:D, 5n74:E, 5n74:F, 5n74:G, 5n74:H, 7olg:A, 7olg:B
8 8tri:C 419 27 0.1413 0.0310 0.4815 1.9
9 7yw3:A 205 65 0.2065 0.0927 0.2923 4.4
10 4kr6:B 388 42 0.1413 0.0335 0.3095 4.7 4kr6:A, 4kr7:A, 4kr7:B, 4kr9:A, 4kr9:B
11 5gnj:B 77 19 0.1087 0.1299 0.5263 7.2 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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