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BioLiP
>protein
FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPNDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLK
REAEYFQLPDLVKLLTPDE

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ocp:B 99 99 1.0000 1.0000 1.0000 2.78e-69 6m8r:A, 6m8r:F, 6ocp:C, 6ocp:D, 6ocp:E, 6ocp:F, 6ocp:G, 6ocp:H, 6ocp:K, 6ocp:L, 6ocp:M, 6ocp:N
2 6sga:FS 277 66 0.2525 0.0903 0.3788 1.07e-04 6sga:FQ, 6sga:FR, 6sga:FU, 6sgb:FQ, 6sgb:FR, 6sgb:FU
3 2i2r:L 138 70 0.2222 0.1594 0.3143 0.002 2i2r:A, 2i2r:C, 2i2r:D, 2i2r:I, 2i2r:J, 2i2r:K, 2nz0:B, 2nz0:D, 1s1g:A, 1s1g:B
4 2i2r:B 124 97 0.2727 0.2177 0.2784 0.003
5 7e8e:D 459 70 0.2323 0.0501 0.3286 0.006 7e87:B, 7e87:A, 7e87:C, 7e87:D, 7e8e:B, 1nn7:A, 7ukg:A, 7ukg:B, 7ukg:C, 7ukg:D
6 8quc:A 395 72 0.2323 0.0582 0.3194 0.011 8f1c:A, 8f1c:B, 8f1c:C, 8f1c:D, 8f1d:A, 8f1d:B, 8f1d:C, 8f1d:D, 7phi:C, 7phi:B, 7phi:D, 8quc:B, 8quc:D, 8quc:C, 8qud:A, 8qud:B, 8qud:C, 8qud:D
7 7ukh:A 203 70 0.2323 0.1133 0.3286 0.043 7ukh:B, 7ukh:C, 7ukh:D
8 1t3q:B 786 41 0.1515 0.0191 0.3659 0.40 1t3q:E
9 4iee:A 452 61 0.1717 0.0376 0.2787 0.59 5c12:A, 5c15:A, 5c2d:A, 5c2f:A, 4iei:A, 4ife:A
10 8osg:A 283 62 0.1717 0.0601 0.2742 1.8
11 8osg:F 258 88 0.2626 0.1008 0.2955 2.5
12 5juy:B 1234 73 0.2525 0.0203 0.3425 2.9 1cy5:A, 3j2t:A, 3j2t:B, 3j2t:C, 3j2t:D, 3j2t:E, 3j2t:F, 3j2t:G, 3jbt:A, 3jbt:C, 3jbt:E, 3jbt:G, 3jbt:I, 3jbt:K, 3jbt:M, 5juy:A, 5juy:C, 5juy:D, 5juy:E, 5juy:F, 5juy:G, 2p1h:A, 5wve:A, 5wve:C, 5wve:E, 5wve:G, 5wve:I, 5wve:K, 5wve:M, 1z6t:A, 1z6t:B, 1z6t:C, 1z6t:D
13 7yr9:A 146 44 0.1515 0.1027 0.3409 4.4 7yr9:B, 7yra:A, 7yra:B
14 4eo3:A 321 35 0.1313 0.0405 0.3714 4.6 4eo3:B
15 2xy4:A 267 49 0.1717 0.0637 0.3469 4.6 4bbp:A, 2ogw:A, 2ogw:B, 2osv:A, 2osv:B, 2prs:A, 2prs:B, 2ps0:A, 2ps0:B, 2ps9:A, 2ps9:B, 7rcj:A, 7rcj:B, 7rcj:C, 7rcj:D, 7rcj:E, 7rcj:F, 2xqv:A
16 5vx6:A 209 48 0.1313 0.0622 0.2708 5.5 5vx6:B
17 7pt6:2 629 58 0.2020 0.0318 0.3448 5.8 5bk4:2, 5bk4:A, 6eyc:2, 6f0l:A, 6f0l:2, 3ja8:2, 7p30:2, 7p30:A, 7p5z:2, 7p5z:A, 7pt6:B, 7pt7:2, 7pt7:B, 6rqc:2, 6sko:2, 5u8s:2, 7v3u:2, 7v3u:B, 7v3v:2, 7v3v:B, 5v8f:2, 8w7m:2, 7w8g:2, 7w8g:B
18 8iuf:C1 495 30 0.1313 0.0263 0.4333 6.3 8iuj:c1, 8iuj:C1
19 8xgc:2 778 58 0.2020 0.0257 0.3448 7.6 8kg6:2, 8kg8:2, 8kg9:2, 8p5e:2, 8p62:2, 8p63:2, 7pmk:2, 7pmn:2, 6ptn:i, 6ptn:2, 6pto:h, 6pto:2, 7qhs:2, 6skl:2, 6u0m:2, 7z13:2, 7z13:a
20 8osg:B 323 37 0.1111 0.0341 0.2973 9.3 8osf:A, 8osf:B, 8osf:C, 8osf:D, 8osf:E, 8osg:C, 8osg:D, 8osg:E
21 4ttb:A 189 18 0.0808 0.0423 0.4444 9.3 4ttb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417