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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FLKPEQQLERCRRIVRQRVDPHIHPSIAQLTVESYDIPGEPMPSDEFFAKLDRGDIDFKPFMLGSEWGTTWGTVWFRLTG
TVPAGYPKGKPLELILDLGWYPHSCGGHIEGLVYRADGTAIKAVHPLNYWVPFMDAEGNAQVPVAEDGSFTLYLEAASNP
LLLGVPPFIETELGDHATGKPDEPYVFKSADLAEFDERYENYSVDLDVVSSLMEFADKQSPRYWQLAKALQRSLNAYDER
NPESVEAARAVLAGVLAKPANASAMNVSAIGHAHIDSAWLWPVRETRRKVARTVSNALALMDADPDFKYAMSSAQQYAWL
EEDHPDIFKRMKRRIEEGRFIPVGGMWVEADGMLPAGESLIRQIAYGRKYFKEHLGVEPKGVWLPASFGYTGAWPQIARR
AGYEWFLTQKISWNDTTKFPHHSFMWEGIDGSRIFTHFPPADTYAAWCKVQELDYAEKNFQDKDLSDRSLLLFGFGDGGG
GPTRNMMEHLHRYENLEGVSKVSIEEPNDFFDKAHQQLAENAGPEMPVWKGELYLELHRGTLTSQQDMKRGCRQEESLLR
TVEYLGAAAVLSDPEYVYPREELDRIWKTLLLNQFHDILPGSAIAWVHREAREDYRRDLKRLAEIAQDMCAVLRKANPQA
DLLAEARISQFRNDGASWHANRINEPTDALSVLTQTLDNGRVLLANGVLSVTIEADGTISSLLDEEHGRELVPAGTRLGQ
YELLRDEPAVWDAWEIERESLLMANAVTGSIESVNTENGAAQVHVHTADGDTVITTTITLRPGSHTLDFHADIDWHERER
FLKVDLPLGIVADQATYDCQYGLIRRPIVKNTASDEAKYESSTNRFAIIGDAGYAAAVINGSVYGSDASPIAGNAAEGRD
SGTMFRLSLLSAPTFPDPRTDIGSHEFDWSVVADATVDRALDAAGVLNAPVLHDVPDITPLASIESVNGTVVLDWMKLAD
DGSGDLIVRAYEAAGGQADAMLHVCPALAGASVHETNVLEGDDLAADLPVALQDGRQNAEGATLHFGPFQLATLRITR

The query sequence (length=1038) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ufr:A 1038 1038 0.9990 0.9990 0.9990 0.0 7ufr:B, 7ufr:C, 7ufr:D, 7ufu:A, 7ufu:B, 7ufu:C, 7ufu:D
2 7ufs:A 1040 1045 0.5973 0.5962 0.5933 0.0 7ufs:B, 7ufs:C, 7ufs:D
3 7uft:A 1032 1042 0.5530 0.5562 0.5509 0.0 7uft:B, 7uft:C, 7uft:D
4 7vqo:A 1180 1102 0.3285 0.2890 0.3094 2.47e-140 7vqo:B, 7vqo:C, 7vqo:D
5 7dd9:A 1129 1020 0.3141 0.2888 0.3196 2.41e-137 7dd9:C, 7dd9:E, 7dd9:G, 6lz1:A, 6lz1:B, 6lz1:C, 6lz1:D
6 6rrn:A 989 490 0.0983 0.1031 0.2082 1.19e-11
7 3bub:A 1016 490 0.0983 0.1004 0.2082 1.39e-11 2alw:A, 3blb:A, 3bud:A, 3bui:A, 3bup:A, 3buq:A, 3bvt:A, 3bvu:A, 3bvv:A, 3bvw:A, 3bvx:A, 3cv5:A, 3czn:A, 3czs:A, 3d4y:A, 3d4z:A, 3d50:A, 3d51:A, 3d52:A, 3ddf:A, 3ddg:A, 3dx0:A, 3dx1:A, 3dx2:A, 3dx3:A, 3dx4:A, 3ejp:A, 3ejq:A, 3ejr:A, 3ejs:A, 3ejt:A, 3eju:A, 2f18:A, 2f1a:A, 2f1b:A, 2f7o:A, 2f7p:A, 2f7q:A, 2f7r:A, 2fyv:A, 1hty:A, 1hww:A, 1hxk:A, 2ow6:A, 2ow7:A, 1ps3:A, 1qwn:A, 1qwu:A, 1qx1:A, 1r33:A, 1r34:A, 6rpc:A, 6rqz:A, 6rrh:A, 6rrj:A, 6rru:A, 6rrw:A, 6rrx:A, 6rry:A, 6rs0:A, 1tqs:A, 1tqt:A, 1tqu:A, 1tqv:A, 1tqw:A
8 2wyh:A 905 405 0.0829 0.0950 0.2123 3.07e-10 2wyh:B, 2wyi:A, 2wyi:B
9 3lvt:A 833 358 0.0800 0.0996 0.2318 3.37e-08
10 3lvt:A 833 54 0.0164 0.0204 0.3148 0.96
11 6b9o:B 937 139 0.0270 0.0299 0.2014 0.011 6b9o:A, 6b9p:A, 6b9p:B
12 1o7d:A 291 163 0.0299 0.1065 0.1902 0.011
13 3n92:A 550 62 0.0202 0.0382 0.3387 0.079 3n98:A
14 1k1x:A 636 161 0.0385 0.0629 0.2484 0.34 1k1w:A, 1k1x:B, 1k1y:A, 1k1y:B
15 6yxx:E7 97 71 0.0193 0.2062 0.2817 1.4
16 6x9d:A 1218 92 0.0241 0.0205 0.2717 1.6 8dkq:A, 5kf6:A, 5kf6:B, 5kf7:A, 7my9:A, 7my9:B, 7mya:A, 7mya:B, 7myb:A, 7myb:B, 7myc:A, 7myc:B, 6ufp:A, 6ufp:B, 6vz9:A, 6vz9:B, 8w0k:A, 6x99:A, 6x99:B, 6x9a:A, 6x9a:B, 6x9b:A, 6x9b:B, 6x9c:A, 6x9c:B, 6x9d:B
17 8rzg:A 659 71 0.0164 0.0258 0.2394 4.5 8rzg:B, 8rzg:C, 8rzg:D, 8rzh:A, 8rzh:B, 8rzh:C, 8rzh:D, 8rzi:A, 8rzi:B, 8rzi:C, 8rzi:D, 8rzj:A, 8rzj:B, 8rzj:C, 8rzj:D, 8rzk:A, 8rzk:B, 8rzk:C, 8rzk:D
18 7omt:A 483 93 0.0231 0.0497 0.2581 7.1 6hd8:A, 6hd9:A, 6hda:A, 6hdb:A, 6hdc:A, 6swr:A, 6swr:D
19 7vru:B 494 93 0.0250 0.0526 0.2796 7.6 7vs4:B
20 6nsm:A 194 81 0.0231 0.1237 0.2963 9.9 6nsm:B, 6nsn:A, 6nsn:B, 6nsr:A, 6nsr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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