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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FLEEEFEINLSVKHLLELWDKNLLNTFEIGTFKGLSQIHSYMFKDIFDFNGQIRNVNISKNNSMFCLARYLKQNLEIIDN
MKHDTFDQIIDKYVEMNICHPFREGNGRSMRIWLDLILKKQLNVVVNWTNINKDEYLLAMINSLIDSTNLKLLIKNNLTN
KITDRNVYIKSIIKSYEYEGFKINIK

The query sequence (length=186) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8idw:B 186 186 1.0000 1.0000 1.0000 1.48e-133 8idw:A, 8idw:C, 8idw:D
2 6ep2:K 204 175 0.4892 0.4461 0.5200 2.97e-59 6ep0:A, 6ep0:B, 6ep2:A, 6ep2:B, 6ep2:C, 6ep2:D, 6ep2:E, 6ep2:F, 6ep2:G, 6ep2:H, 6ep2:I, 6ep2:J, 6ep2:L, 6ep5:A, 6ep5:B, 6ep5:C, 6ep5:D, 6ep5:E, 6ep5:F
3 3s6a:A 178 172 0.4570 0.4775 0.4942 3.00e-55 3se5:A, 3se5:B, 3se5:C, 3se5:D, 3sn9:A, 3sn9:B, 3sn9:C, 3sn9:D, 3sn9:E, 3sn9:F, 3sn9:G, 3sn9:H, 3sn9:I, 3sn9:J, 3sn9:K, 3sn9:L, 3sn9:M, 3sn9:N, 3sn9:O, 3sn9:P, 3zlm:A
4 2f6s:A 180 170 0.4194 0.4333 0.4588 7.13e-42 2f6s:B
5 3zc7:A 199 166 0.2688 0.2513 0.3012 7.29e-16 3zcb:A
6 2jk8:A 291 228 0.2634 0.1684 0.2149 3.99e-07 5nh2:A
7 4wgj:A 210 136 0.1559 0.1381 0.2132 2.45e-04
8 4n67:A 214 123 0.1452 0.1262 0.2195 0.006
9 4itr:A 299 69 0.0968 0.0602 0.2609 0.92 4itr:B, 3n3u:A, 6siu:B, 6siu:A
10 7eoz:A 482 66 0.0968 0.0373 0.2727 1.2 7eoz:B
11 3s1s:A 870 59 0.0914 0.0195 0.2881 1.8
12 7cb8:A 394 84 0.0968 0.0457 0.2143 2.2 7cb8:B
13 8ei4:A 365 83 0.1183 0.0603 0.2651 2.3
14 1a0e:A 443 70 0.1237 0.0519 0.3286 2.8 1a0e:D
15 4x2d:A 227 42 0.0753 0.0617 0.3333 4.4
16 7b7z:A 340 18 0.0538 0.0294 0.5556 6.6 7b80:A, 6i7g:A, 6i7g:B, 6i7i:A, 6i7k:A, 6i7l:A, 4u07:A, 4u07:B, 4u0s:A, 4u0s:B, 4u0u:A, 4u0u:B, 4u0z:A, 4u0z:B, 4u0z:C, 4u0z:D, 4u0z:E, 4u0z:F, 4u0z:G, 4u0z:H, 6zmd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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