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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FHVNKSGFPIDSHTWERMWLHVAKVHPRGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPDWLQAIQNYMKTLQYNHTGT
QFFEIRKMRPLSGLMETAKEMTRESLPIKALEAVILGIYLTNGQPSIERFPISFKTYFSGNYFHHVVLGIYCNGYYGSLG
MSRRAELMDKPLTFRTLSDLVFDFEDSYKKYLHTVKKVKIGLYVPHEPHSFQPIEWKQLVLNVSKMLRADIRKELEKYAR
DMRMKILKPAS

The query sequence (length=251) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6jze:A 254 251 0.9960 0.9843 0.9960 0.0 6j4p:A, 6j4q:J, 6j4q:A, 6j4q:F, 6j4q:C, 6j4v:A, 6jzd:A, 6qby:A, 7zcw:C
2 6j7b:A 249 246 0.6096 0.6145 0.6220 8.90e-114 6j4u:A, 6j8f:B, 6j8n:B, 6j8n:D, 6j8o:B, 6j91:B, 6j9h:B, 6j9h:D, 6k81:A, 6lpg:A, 6nvq:C, 6ocg:A, 6och:A, 6och:C
3 2wyo:C 496 69 0.0797 0.0403 0.2899 0.66 2wyo:B, 2wyo:D
4 3h94:A 297 42 0.0598 0.0505 0.3571 1.1 3h94:B, 3opo:A, 3opo:B, 3ow7:A, 3ow7:B
5 2wyo:A 520 76 0.0837 0.0404 0.2763 1.6
6 7cvo:A 130 35 0.0558 0.1077 0.4000 5.3 7c9o:C, 7cvq:A, 7cvq:F, 7cvq:K, 7cvq:P
7 8tri:B 454 34 0.0478 0.0264 0.3529 5.7 7suu:A, 7suu:B, 8tri:A
8 8tri:C 419 34 0.0478 0.0286 0.3529 6.3
9 1ehi:A 360 62 0.0598 0.0417 0.2419 7.3
10 5vt8:C 211 34 0.0478 0.0569 0.3529 7.8 5vt8:B, 5vt8:A, 5vt8:D
11 6agk:F 309 69 0.0876 0.0712 0.3188 8.1 5fnv:F, 6gf3:F, 6jcj:F, 5jqg:F, 5xhc:F, 5xi5:F, 5xi7:F, 5yl4:F, 5z4u:F, 5zxh:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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