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BioLiP
>protein
EYKGHSGHPLILKQEGEYKGYSGEPLILKQEGEYKGYSGTPLILEQKGEYQSFSGTPLILKQEGEYRGFSGAPLILKQDG
EYKSFSGYPLLLNI

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7zcu:S 94 94 1.0000 1.0000 1.0000 1.43e-60 7zdi:S, 7ze3:S, 7ze8:S
2 8zc9:A 1000 53 0.1489 0.0140 0.2642 0.48 8wyc:C, 8wyc:D, 8wyf:C, 8wyf:D, 8ylt:A, 8ylt:B, 8ylt:C, 8ylt:D, 8zc9:D
3 8zc9:B 971 53 0.1489 0.0144 0.2642 0.49 8wyb:A, 8wyb:B, 8wyb:C, 8wyb:D, 8wyc:A, 8wyc:B, 8wyf:A, 8wyf:B, 8zc9:E
4 1bwu:D 109 72 0.1489 0.1284 0.1944 1.6 1bwu:Q
5 7u8v:A 454 40 0.1170 0.0242 0.2750 1.8 7u8w:A, 7u8x:A, 7ulk:B, 5y3n:A
6 7c05:A 435 40 0.1170 0.0253 0.2750 1.8 7c7c:A, 7u8u:A, 7u8u:B, 7ulk:A, 5y3o:A, 4z1f:A, 4z1g:A, 4z1h:A
7 5tth:A 671 73 0.2021 0.0283 0.2603 6.0 6d14:A, 7exp:A, 4ipe:A, 4ivg:A, 4iyn:A, 4j0b:A, 4mli:A, 4mli:C, 4mls:A, 5tvu:A, 5tvw:A, 5tvx:A
8 7qok:A 1361 60 0.1596 0.0110 0.2500 7.1
9 2e7u:A 424 74 0.2447 0.0542 0.3108 8.2
10 5i92:F 420 25 0.1170 0.0262 0.4400 9.1
11 5ln8:A 123 35 0.1170 0.0894 0.3143 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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