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BioLiP
>protein
EVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRIYQDERE
RSLR

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2o49:A 84 84 1.0000 1.0000 1.0000 1.77e-56 6lff:A, 6lff:B, 2o4a:A
2 2d5v:A 135 69 0.3214 0.2000 0.3913 5.43e-07 2d5v:B, 8t0f:A, 8t11:A
3 6brh:B 502 70 0.2381 0.0398 0.2857 0.56 6brg:A, 6brg:B, 6brg:C, 6brg:D, 6brh:A, 6brk:A
4 7d0j:J 41 31 0.1548 0.3171 0.4194 1.1 7bgi:J, 7blx:J, 7dz7:J, 7dz8:J, 8h2u:J, 6ijj:J, 6ijo:J, 6jo5:J, 6jo6:J, 7r3k:J, 7wyi:J, 7wzn:J, 7zq9:J, 7zqc:J, 7zqd:J, 7zqd:J2
5 8cls:A 837 24 0.1071 0.0108 0.3750 4.0
6 1gr3:A 132 35 0.1667 0.1061 0.4000 5.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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