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BioLiP
>protein
EVQFGAYLAVLLGTFLPALFLVNLFIQTEARKAGKAGGQDS

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8j5k:M 41 41 1.0000 1.0000 1.0000 1.56e-23 8j5k:m
2 8xlp:m 38 37 0.5854 0.6316 0.6486 2.04e-12
3 7y5e:ML 42 36 0.6098 0.5952 0.6944 1.35e-11 7y5e:m6, 7y7a:M9, 7y7a:ME, 7y7a:mO, 7y7a:mZ, 7y7a:Mm
4 8wb4:M 36 35 0.5122 0.5833 0.6000 2.48e-10 8wb4:m
5 4yuu:m2 40 33 0.5122 0.5250 0.6364 2.96e-08 4yuu:m1, 4yuu:M2
6 8wql:MD 36 32 0.2927 0.3333 0.3750 0.077 8wql:ME, 8wql:M1, 8wql:m1, 8wql:mD, 8wql:mE
7 3a0b:M 36 35 0.2683 0.3056 0.3143 0.16 3a0b:m, 3a0h:M, 3a0h:m, 5b66:M, 7d1u:M, 7d1u:m, 7dxh:m, 8f4f:m, 6jln:M, 6jlo:M, 6jlp:M, 5mx2:m, 1s5l:M, 1s5l:m, 5tis:M, 5v2c:M
8 2c1d:B 137 27 0.2683 0.0803 0.4074 0.98 2c1d:D, 2c1d:F, 2c1d:H
9 7ymi:M 31 24 0.2439 0.3226 0.4167 1.4 7ymi:m, 7ymm:1M, 7ymm:2M, 7ymm:3M, 7ymm:4M
10 1u38:A 89 40 0.3171 0.1461 0.3250 2.9
11 8tow:M 31 22 0.2439 0.3226 0.4545 5.3 8tow:m
12 2o2c:A 564 18 0.2195 0.0160 0.5000 8.9 2o2c:B, 2o2c:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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