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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EVFDNELVSYEGVDWEKIPNRFKRRRMPLSDEVMDEWKIPYRERDYCVHKLLELRKCVQKTFYRGECDHHRHEYHMCQHL
ELRRRKAIKDLREELGR

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8j9h:B7 97 97 1.0000 1.0000 1.0000 4.50e-68 8j9i:B7, 8j9j:B7
2 6tmh:B 479 47 0.1753 0.0355 0.3617 0.24 6tmh:D, 6tmk:B2, 6tmk:D2, 6tmk:B1, 6tmk:D1
3 3pdi:B 432 35 0.1031 0.0231 0.2857 2.3 3pdi:D, 3pdi:F, 3pdi:H
4 1y7b:A 534 24 0.1031 0.0187 0.4167 2.4 1y7b:B, 1y7b:C, 1y7b:D, 1yi7:A, 1yi7:B, 1yi7:C, 1yi7:D
5 6gk5:A 403 51 0.1753 0.0422 0.3333 2.4 6gk6:A
6 5xyi:a 100 28 0.1237 0.1200 0.4286 2.9
7 7xvr:A 389 35 0.1443 0.0360 0.4000 3.4 7xvr:B, 7xvu:A, 7xvu:B, 7xvv:A, 7xvv:B, 7xvw:A, 7xvw:B
8 4b6z:B 382 42 0.1340 0.0340 0.3095 4.5 4b6z:A, 4b6z:C, 4b6z:D
9 6k1l:A 382 40 0.1340 0.0340 0.3250 5.1 6k1l:B, 6k1l:C, 6k1l:D, 6k1m:A, 6k1m:B, 6k1m:C, 6k1m:D, 6k1n:A, 6k1n:B, 6k1n:C, 6k1n:D
10 4n83:A 285 50 0.1753 0.0596 0.3400 5.5 4n83:B, 4n83:C, 4n83:D, 4n83:E, 4n83:F, 4n83:G, 4n83:H
11 6qzk:A 746 56 0.1753 0.0228 0.3036 6.3
12 4mgz:E 632 22 0.0928 0.0142 0.4091 7.0 3cf6:E, 4mgi:E, 4mgk:E, 4mgy:E, 4mh0:E
13 5fpx:B 107 20 0.0928 0.0841 0.4500 7.4 5fpx:A
14 5e3x:A 489 41 0.1340 0.0266 0.3171 7.5
15 2bcg:G 442 42 0.1443 0.0317 0.3333 9.1 1ukv:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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