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BioLiP
>protein
EQRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKDGEVKPFPSN

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3orc:A 65 65 1.0000 1.0000 1.0000 2.51e-44 6cro:A
2 2pij:A 59 63 0.3846 0.4237 0.3968 4.61e-07
3 8v9l:z 375 66 0.3538 0.0613 0.3485 0.79 8v9j:z
4 3kzh:A 316 24 0.1385 0.0285 0.3750 3.1 3kzh:B
5 8dq2:A 110 32 0.2154 0.1273 0.4375 3.5 8dq2:B, 8dq2:C, 8dq2:D, 8fnr:A, 8fnr:B, 8fnr:C, 8fnr:D
6 8uhe:K 593 47 0.2462 0.0270 0.3404 3.8
7 1g82:A 157 25 0.1231 0.0510 0.3200 6.1
8 3ue1:A 604 28 0.2000 0.0215 0.4643 6.5 3udi:A, 3udi:B, 3udx:A, 3udx:B, 3ue0:A, 3ue0:B, 3ue1:B
9 6m8n:A 367 32 0.1846 0.0327 0.3750 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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