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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EQDRWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGEDILFAMTSLGFENYAEA
LKIYLSKYRE

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aw7:B 92 90 1.0000 0.9783 1.0000 8.30e-63 7aw9:B, 4g91:B, 4g92:B, 6y35:B, 6y36:B, 6y37:B, 6y39:B, 6y39:E, 6y39:H
2 4awl:B 92 90 0.7667 0.7500 0.7667 2.19e-49 7ah8:A, 7ah8:C, 6qmp:B, 6qmq:B, 6qms:B, 8qu2:B, 8qu3:B, 8qu4:B
3 6r2v:B 93 90 0.7444 0.7204 0.7444 7.23e-49 7cvo:B, 7cvq:B, 7cvq:G, 7cvq:L, 7cvq:Q
4 7c9o:B 85 85 0.6889 0.7294 0.7294 3.64e-43
5 1jfi:B 135 80 0.3333 0.2222 0.3750 3.87e-14
6 4wzs:B 113 75 0.2889 0.2301 0.3467 1.44e-09
7 1a7w:A 68 64 0.2444 0.3235 0.3438 1.57e-04 5t5k:A, 5t5k:B, 5t5k:C, 5t5k:D, 5t5k:E, 5t5k:F
8 6qmq:C 84 69 0.2556 0.2738 0.3333 0.003 7ah8:B, 7ah8:D, 4awl:C, 6qmp:C, 6qms:C, 8qu2:C, 8qu3:C, 8qu4:C
9 7aw9:C 118 65 0.2333 0.1780 0.3231 0.006 7aw7:C, 4g91:C, 4g92:C, 6y35:C, 6y36:C, 6y37:C, 6y39:C, 6y39:F, 6y39:I
10 7d69:D 96 41 0.1556 0.1458 0.3415 0.32 7d69:H
11 7d69:B 78 66 0.1667 0.1923 0.2273 0.69 7d69:F
12 8jcc:H 94 49 0.1333 0.1277 0.2449 0.77 8jcc:D, 8jcd:D, 8jcd:H
13 8je1:A 675 61 0.1556 0.0207 0.2295 0.81
14 6kxv:E 95 67 0.1778 0.1684 0.2388 2.6 6kxv:A
15 7shl:A 645 60 0.1556 0.0217 0.2333 3.1
16 7vfs:A 1266 45 0.1111 0.0079 0.2222 4.1 7vfu:A, 7vfv:A, 7vfw:A
17 5glg:A 471 44 0.1444 0.0276 0.2955 7.5 6ku6:B, 6ku6:H, 5zyn:B
18 3ez2:B 394 71 0.2556 0.0584 0.3239 8.9 3ez2:A, 3ez6:A, 3ez6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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