Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EPTIHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKCSFEQVAYLLWNSELPNDSELKAFVNFERSHRKLDENVK
GAIDLLSTACHPMDVARTAVSVLGANHARAQDSSPEANLEKAMSLLATFPSVVAYDQRRRRGEELIEPREDLDYSANFLW
MTFGEEAAPEVVEAFNVSMILYAEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGIRKDE
SLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYNGLEAAMEEAKQIKPNLDY
PAGPTYNLMGFDTEMFTPLFIAARITGWTAHIMEQVADNALIRPLSEYNGPEQRQVP

The query sequence (length=377) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1a59:A 377 377 1.0000 1.0000 1.0000 0.0
2 6s87:D 365 373 0.3979 0.4110 0.4021 7.53e-89
3 1iom:A 374 375 0.4085 0.4118 0.4107 4.27e-87 1ixe:A, 1ixe:B, 1ixe:C, 1ixe:D
4 6aby:A 372 378 0.3528 0.3575 0.3519 4.22e-81 6abx:A, 6abx:B, 6aby:B
5 1aj8:A 371 370 0.3846 0.3908 0.3919 5.99e-78 1aj8:B
6 8bp7:E 379 367 0.3528 0.3509 0.3624 3.20e-77 8bp7:B, 8bp7:D, 8bp7:F
7 2c6x:A 363 377 0.3607 0.3747 0.3607 1.00e-75 2c6x:B, 2c6x:C, 2c6x:D
8 2h12:B 426 388 0.3660 0.3239 0.3557 6.57e-64 2h12:A, 2h12:C, 2h12:D, 2h12:E, 2h12:F
9 4tvm:A 380 380 0.3289 0.3263 0.3263 7.40e-57
10 3msu:B 426 385 0.3263 0.2887 0.3195 3.02e-55 3msu:A
11 4jae:A 426 390 0.3342 0.2958 0.3231 3.50e-55 4jae:B, 4jaf:A, 4jaf:B, 4jag:A, 4jag:B, 1nxg:A, 1nxg:B, 1owb:A, 1owb:B
12 6abw:A 369 377 0.3316 0.3388 0.3316 6.41e-53
13 2ifc:C 382 389 0.3369 0.3325 0.3265 5.86e-49 2ifc:A, 2ifc:B, 2ifc:D, 2r26:A, 2r26:B, 2r26:C, 2r26:D, 2r9e:A, 2r9e:B, 2r9e:C, 2r9e:D, 4ybo:B, 4ybo:C
14 8glb:D 374 395 0.2971 0.2995 0.2835 5.38e-33 8gi7:A, 8gi7:B, 8gi7:C, 8gi7:D, 8giw:A, 8giw:B, 8giw:C, 8giw:D, 8glb:A, 8glb:B, 8glb:C, 8gmi:A, 8gmi:B, 8gmi:C, 8gmi:D, 8gmi:E, 8gmi:F, 8gmi:G, 8gmi:H, 8gmk:A, 8gmk:B, 8s9d:A
15 6csc:A 437 379 0.2599 0.2243 0.2586 2.18e-19 1al6:A, 1amz:A, 1csc:A, 1csh:A, 1csi:A, 1csr:A, 1css:A, 2csc:A, 3csc:A, 4csc:A, 6csc:B, 2cts:A, 3cts:A, 4cts:A, 4cts:B, 5cts:A, 6cts:A, 3enj:A, 5uzp:A, 5uzp:B
16 8gr9:A 432 392 0.2467 0.2153 0.2372 9.32e-14
17 5uqr:A 439 372 0.2202 0.1891 0.2231 3.56e-11 6bol:A, 6bon:B, 6boo:B, 6boo:A, 6boo:D, 5uqr:B, 5uqu:A, 5uqu:B
18 6hxp:A 256 250 0.1698 0.2500 0.2560 4.61e-11
19 6hxp:A 256 31 0.0345 0.0508 0.4194 0.65
20 6hxo:E 180 70 0.0637 0.1333 0.3429 0.13
21 6hxj:D 591 70 0.0637 0.0406 0.3429 0.16 6hxj:B, 6hxj:F, 6hxj:H, 6hxn:A, 6hxn:B, 6hxo:A, 6hxo:B, 6hxo:F, 6hxo:G, 6hxo:H, 6nzy:A, 6nzy:D, 6qcl:B, 6qcl:E, 6qcl:F, 6qcl:G, 6qcl:H
22 6qcl:A 215 76 0.0716 0.1256 0.3553 0.28
23 4r3u:C 131 61 0.0557 0.1603 0.3443 3.5 4r3u:D
24 4r9k:C 160 56 0.0451 0.1062 0.3036 7.1 5jpu:A, 5jpu:B, 4r9k:A, 4r9k:B, 4r9l:A, 4r9l:B
25 4mcw:B 363 74 0.0557 0.0579 0.2838 8.4 4mcw:A, 4mdz:A, 4mdz:B, 4me4:A, 4me4:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218