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BioLiP
>protein
EPRINVGSRFQAEIPLMRDRALAAADPHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESR
GDILETLNKLLLKKPLRPHNHPLATYHYTGWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVK

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6z2k:J 157 157 1.0000 1.0000 1.0000 3.49e-118
2 5ij7:B 469 117 0.2166 0.0725 0.2906 2.59e-04 6b3w:A, 6b3w:B, 6c23:K, 6c24:K, 5ij7:A, 5ij8:A, 5ij8:B, 4w2r:A, 4w2r:B
3 4a69:C 69 45 0.1019 0.2319 0.3556 0.003 4a69:D
4 1ey2:A 419 74 0.1465 0.0549 0.3108 0.90
5 8h7g:K 352 40 0.1019 0.0455 0.4000 3.5
6 4xj2:A 162 59 0.1210 0.1173 0.3220 3.8
7 6jgz:B 3485 43 0.0892 0.0040 0.3256 8.4 6jg3:A, 6jg3:B, 6jg3:C, 6jg3:D, 6jgz:D, 6jgz:F, 6jgz:H, 6jh6:B, 6jh6:D, 6jh6:F, 6jh6:H, 6jhn:A, 6jhn:C, 6jhn:E, 6jhn:G, 6ji0:A, 6ji0:C, 6ji0:E, 6ji0:G, 6jrr:A, 6jrr:C, 6jrr:E, 6jrr:G
8 7cm1:B 387 26 0.0764 0.0310 0.4615 9.1 7cm1:A, 7fgb:A, 7fgb:B, 7fgc:A, 7fgc:B, 7fgd:A, 7fgd:B, 7fge:A, 7fge:B, 7fge:C, 7fge:D, 7fge:E, 7fge:F, 7fge:G, 7fge:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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