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BioLiP
>protein
EPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3a0b:L 37 36 1.0000 0.9730 1.0000 3.65e-19 3a0b:l, 5b66:L, 7czl:L, 7czl:l, 7dxh:l, 7eda:L, 5mx2:L, 5mx2:l, 7nhp:L, 7nhq:L, 4pj0:L, 4pj0:l
2 7y5e:L6 37 35 0.8333 0.8108 0.8571 5.56e-16 7y5e:l6, 7y7a:LO, 7y7a:lO, 7y7a:LZ, 7y7a:lZ, 4yuu:l2, 4yuu:L2
3 7vd5:L 38 35 0.8333 0.7895 0.8571 9.81e-16 8j5k:L, 8j5k:l, 7vd5:l, 8xlp:L
4 8wql:LD 38 33 0.8056 0.7632 0.8788 6.86e-15 8wql:LE, 8wql:L1
5 7pi0:L 38 36 0.7778 0.7368 0.7778 4.70e-14 7pi0:l, 7pi5:l, 7pin:l, 7pin:L1, 7piw:L, 7piw:L1, 7pnk:l
6 5xnm:L 37 36 0.7778 0.7568 0.7778 7.32e-14 5mdx:L, 5mdx:l, 7oui:L, 7oui:l, 5xnm:l
7 7ymi:L 36 35 0.8333 0.8333 0.8571 8.95e-10 7ymi:l, 7ymm:1L, 7ymm:2L, 7ymm:3L, 7ymm:4L
8 6wj6:L 31 31 0.7500 0.8710 0.8710 1.56e-05
9 3o5b:A 479 33 0.3611 0.0271 0.3939 0.44 3o5b:B, 3o80:A, 3o8m:A
10 7xnk:A 348 21 0.3056 0.0316 0.5238 3.8 7tci:A, 7tci:G, 7tci:E, 7tci:C, 4umo:A, 6v01:A, 6v01:J, 6v01:D, 6v01:G, 7xnk:C, 7xnk:E, 7xnk:G, 7xnl:A, 7xnl:C, 7xnl:E, 7xnl:G, 7xnn:B, 7xnn:G, 7xnn:C, 7xnn:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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