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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EPKVVGVEILEKSGLDIKKLVDKLVKATAAEFTTYYYYTILRMHLTGMEGEGLKEIAEDARLEDRLHFELMTQRIYELGG
GLPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMTYGKDPRTYDLAQRILQEEIEHEAWFLEL
LYGRPSGH

The query sequence (length=168) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2clb:A 169 168 1.0000 0.9941 1.0000 5.27e-123 2clb:B, 2clb:C, 2clb:D, 2clb:M, 2clb:N, 2clb:O, 2clb:P
2 7stw:A 170 154 0.6250 0.6176 0.6818 1.34e-73 7stw:B, 7stw:C, 7stw:D, 7stw:E, 7stw:F, 7stw:G, 7stw:H, 7stw:I, 7stw:J, 7stw:K, 7stw:L
3 2vzb:A 168 149 0.2917 0.2917 0.3289 1.35e-12 2vzb:B, 2vzb:C, 2vzb:D
4 8w1e:B 172 146 0.2321 0.2267 0.2671 0.032 8w1d:A, 8w1e:A, 8w1e:C, 8w1e:D, 8w1e:E, 8w1e:F, 8w1e:G, 8w1e:H, 8w1e:I, 8w1e:J, 8w1e:K, 8w1e:L, 8w1f:A, 8w1f:B, 8w1f:C, 8w1f:D, 8w1f:E, 8w1f:F, 8w1f:G, 8w1f:H, 8w1f:I, 8w1f:J, 8w1f:K, 8w1f:L
5 7s8t:J 83 51 0.1012 0.2048 0.3333 1.1 7s8t:A, 7s8t:E, 7s8t:F, 7s8t:H, 7s8t:G, 7s8t:I
6 6kf9:C 388 36 0.0952 0.0412 0.4444 3.7 9bct:C, 9bcu:C
7 3nzq:A 628 64 0.1131 0.0303 0.2969 6.1 3nzq:B
8 1nf6:F 171 142 0.2083 0.2047 0.2465 9.9 1nf4:A, 1nf4:B, 1nf4:C, 1nf4:D, 1nf4:E, 1nf4:F, 1nf4:G, 1nf4:H, 1nf4:I, 1nf4:J, 1nf4:K, 1nf4:L, 1nf4:M, 1nf4:N, 1nf4:O, 1nf4:P, 1nf6:A, 1nf6:B, 1nf6:C, 1nf6:D, 1nf6:E, 1nf6:G, 1nf6:H, 1nf6:I, 1nf6:J, 1nf6:K, 1nf6:L, 1nf6:M, 1nf6:N, 1nf6:O, 1nf6:P, 1nfv:A, 1nfv:B, 1nfv:C, 1nfv:D, 1nfv:E, 1nfv:F, 1nfv:G, 1nfv:H, 1nfv:I, 1nfv:J, 1nfv:K, 1nfv:L, 1nfv:M, 1nfv:N, 1nfv:O, 1nfv:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218