Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EPIHRVSSELCANCHEDIYRQWKGSMHAKSTALSDPIHGLFYQQEVGDPTAEGMVHKKSGKFPLCLYCHAPNAARDQTTK
LDAHPAYTEGVNCVACHTLKTYNGIQDAEGKLRYGIKAYDLSDRLQAPIGFPRELERLKAKPNPHLGEPVELDGKTIPAL
TMEANPRQLRTSDACMGCHDQRDNPQGVPLCQTGKEFIAGGSQVACQTCHMPVAGGFADHSMGGGHHEAMLKRSIVFDLT
TKADKEKIAAQVWIRNLQPHAMPTGAPFRNLYLKLTAYDASGEVLWQNAADHPSKDDPRAYFAYGLADDQGNPAPPPTAT
KPGDDTRLQPHETRELNYEIPAKGVALVRGELYYNLLWPSLVEKFTQLPAELTAPVLIAVSEKPI

The query sequence (length=385) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ze8:A 385 385 1.0000 1.0000 1.0000 0.0
2 1sp3:A 436 178 0.1013 0.0894 0.2191 0.42
3 6h5l:A 506 219 0.1377 0.1047 0.2420 0.45
4 1bvb:A 211 80 0.0597 0.1090 0.2875 0.89 1ft5:A, 1ft6:A
5 1bvb:A 211 88 0.0545 0.0995 0.2386 1.4 1ft5:A, 1ft6:A
6 5wyj:CB 1098 127 0.0909 0.0319 0.2756 2.0 7ajt:UV, 7aju:UV, 7d4i:RE, 7d5s:RE, 7d5t:RE, 7d63:RE, 6ke6:RE, 6lqp:RE, 6lqq:RE, 6lqr:RE, 6lqs:RE, 6lqt:RE, 6lqu:RE, 7suk:NH, 5wyk:CB, 6zqb:UV, 6zqc:UV, 6zqd:UV, 6zqe:UV
7 8cir:B 345 106 0.0727 0.0812 0.2642 5.0 8cir:A, 8cis:A, 6txs:AAA
8 2ivf:B 337 50 0.0442 0.0504 0.3400 5.4
9 6p73:A 439 41 0.0390 0.0342 0.3659 5.7 6p73:B, 3ubr:A, 3ubr:B
10 2c1v:A 335 54 0.0442 0.0507 0.3148 6.2 2c1u:A, 2c1u:B, 2c1u:C, 2c1u:D, 2c1v:B
11 2efc:B 165 44 0.0364 0.0848 0.3182 6.8 2efc:D, 2efe:B, 2efe:D, 2efh:B, 2efh:D, 4g01:B
12 4wng:A 330 95 0.0649 0.0758 0.2632 8.5 7ep7:A, 4g2v:A, 3ro2:A, 3ro3:A, 4wnd:A, 4wne:A, 4wnf:A
13 5djq:B 197 57 0.0519 0.1015 0.3509 8.9 5djq:E, 5djq:H, 5djq:L, 3mk7:B, 3mk7:E, 3mk7:H, 3mk7:L
14 4n4j:A 497 63 0.0442 0.0342 0.2698 9.6 4n4k:A, 4n4l:A, 4n4m:A, 4rwm:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218