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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ENFFGKTLAARPVEAIPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFSRKNVLRGLHAEPWDK
YISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLVNDYWALELKPKYAFVNYADP
SLDIKWENLEEAEVSEADENHPFLKDVKPLRKEDL

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ixl:C 197 195 1.0000 0.9898 1.0000 2.54e-144 2ixl:A, 2ixl:B, 2ixl:D, 1nyw:A, 1nyw:B, 1nzc:A, 1nzc:B, 1nzc:C, 1nzc:D
2 6ndr:A 188 161 0.2872 0.2979 0.3478 1.96e-18 6ndr:B
3 6c46:A 183 167 0.3077 0.3279 0.3593 5.17e-18 6c46:D
4 2ixh:A 184 177 0.3128 0.3315 0.3446 6.65e-18 2ixh:B, 2ixi:B, 2ixi:A, 2ixk:A, 2ixk:B
5 1dzt:A 183 177 0.2769 0.2951 0.3051 8.03e-14 1dzt:B
6 2ixc:A 198 186 0.3077 0.3030 0.3226 2.42e-12 2ixc:B, 2ixc:C, 2ixc:D
7 1epz:A 183 187 0.2821 0.3005 0.2941 3.92e-12
8 7pwh:AAA 203 167 0.2513 0.2414 0.2934 3.98e-11
9 7pvi:AAA 199 178 0.2821 0.2764 0.3090 1.24e-10 7pvi:BBB, 7pwb:AAA, 7pwb:BBB
10 3ryk:A 175 165 0.2615 0.2914 0.3091 1.30e-10 3ryk:B
11 4hn1:C 201 172 0.2615 0.2537 0.2965 1.44e-09 4hmz:A, 4hmz:B, 4hmz:C, 4hmz:D, 4hn1:A, 4hn1:B, 4hn1:D
12 1oi6:A 202 173 0.2462 0.2376 0.2775 4.35e-08 1oi6:B
13 5buv:A 174 125 0.1692 0.1897 0.2640 7.76e-06 5buv:B
14 8dcl:A 185 101 0.1436 0.1514 0.2772 0.009 7anj:A, 7anj:B, 8dak:A, 8dak:B, 8dcl:B
15 2xzl:A 756 42 0.0718 0.0185 0.3333 2.7
16 5xj2:A 454 72 0.0974 0.0419 0.2639 3.2 5xj2:B, 5xj2:C, 5xj2:D, 5zq0:A, 5zq1:A, 5zq8:B, 5zq8:A, 5zth:A
17 6w54:A 221 84 0.1333 0.1176 0.3095 3.7
18 5chi:A 230 46 0.0769 0.0652 0.3261 4.8 5chi:B, 5chi:C
19 7ned:A 545 83 0.1026 0.0367 0.2410 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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