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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ELTLDPDTANPRLILSLDLKGVRLGERAQDLPNHPCRFDTNTRVLASCGFSSGRHHWEVEVGSKDGWAFGVARESVRRKG
LTPFTPEEGVWALQLNGGQYWAVTSPERSPLSCGHLSRVRVALDLEVGAVSFYAVEDMRHLYTFRVNFQERVFPLFSVCS
TGTYLRIWP

The query sequence (length=169) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ovx:A 174 169 0.9527 0.9253 0.9527 8.75e-120 8a5l:A, 8a5m:A, 8a5m:B, 8a8x:A, 8a8x:C, 7ow2:A, 7ow2:B, 7ow2:C, 7ow2:D, 8r5b:A, 8r5b:B, 8r5c:A, 7w0q:A, 7w0s:B, 7w0s:C, 7w0s:E, 7w0t:F, 7w0t:B, 7w0t:C, 7x6y:A, 7x6z:A, 7x70:A
2 8hjt:A 197 170 0.4556 0.3909 0.4529 3.06e-40 8hjt:B
3 8ixv:A 187 162 0.3905 0.3529 0.4074 1.06e-36 8ize:A, 8izg:A, 6j06:A, 6j06:C, 6j06:B, 8jyc:C, 8jyc:D, 8jye:C, 8jye:D, 4n7u:A, 5zxk:A
4 8pd6:A 181 160 0.4083 0.3812 0.4313 2.14e-36
5 8igt:A 208 173 0.4320 0.3510 0.4220 2.34e-36 8jyc:A, 8jyc:B, 8jye:A, 8jye:B
6 8jya:B 191 162 0.3905 0.3455 0.4074 6.58e-36 8hjt:C, 8hjt:D, 8jy9:A, 8jy9:B, 8jyf:B
7 6j0k:A 191 164 0.4083 0.3613 0.4207 7.49e-36 6j0g:A, 6j0g:B, 6j0g:C, 6j0g:D, 6j0k:B
8 4cg4:C 376 158 0.3905 0.1755 0.4177 4.24e-32 4cg4:D, 4cg4:E, 4cg4:F
9 7xt2:B 388 173 0.3432 0.1495 0.3353 2.53e-20 7xt2:A
10 7xyz:B 456 173 0.3136 0.1162 0.3064 1.78e-18 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
11 4b3n:A 557 134 0.2485 0.0754 0.3134 1.80e-07 4b3n:B
12 1dp5:A 329 50 0.0888 0.0456 0.3000 3.2 1dpj:A, 1fmu:A, 1fq4:A, 1fq5:A, 1fq6:A, 1fq7:A, 1fq8:A, 1g0v:A, 2jxr:A
13 4qc6:A 179 33 0.0828 0.0782 0.4242 7.0 4qc6:B
14 1ize:A 323 75 0.1302 0.0681 0.2933 7.5
15 3p5u:A 220 48 0.0769 0.0591 0.2708 8.5 3p5v:A, 3p5x:A
16 4m3q:A 243 26 0.0592 0.0412 0.3846 8.6 4m3q:B, 6mep:B, 5tc0:A, 5td2:A
17 4tpn:A 386 50 0.1124 0.0492 0.3800 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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