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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EKVRIYRMDGSYRSVELKHGNNTTVQQIMEGMRLSQETQQYFTIWICSENLSLQLKPYHKPLQHVRDWPEILAELTNLDP
QRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEE
NLKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTHKVIPVYVGVNIK
GLHLLNMETKALLISLKYGCFMWQLGDTDTCFQIHSMENKMSFIVHTKQAGLVVKLLMKLNGQLM

The query sequence (length=305) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4hdq:A 311 310 0.9967 0.9775 0.9806 0.0 6oq3:A, 6oq4:A, 8su8:A, 8t09:A, 8t7v:A, 3u7d:A, 3u7d:C, 6uzk:A
2 6cds:A 325 238 0.1770 0.1662 0.2269 2.50e-07 6cds:B, 7lwh:A, 4p7i:A, 4p7i:B, 3wa0:A, 3wa0:B, 3wa0:C, 3wa0:E, 3wa0:F, 4zri:A, 4zri:B, 4zrk:A, 4zrk:C, 4zrk:B, 4zrk:D
3 6mfs:A 370 152 0.1180 0.0973 0.2368 7.53e-07 2g35:A, 2k00:A, 1mk7:B, 1mk7:D, 1mk9:B, 1mk9:D, 1mk9:F, 1mk9:H, 2mwn:B, 1y19:B, 1y19:D, 1y19:F, 1y19:H, 1y19:J, 1y19:L
4 8cir:B 345 179 0.1410 0.1246 0.2402 2.78e-06 8cir:A, 8cis:A, 6txs:AAA
5 2ems:A 316 183 0.1344 0.1297 0.2240 2.84e-06 2d10:A, 2d10:B, 2d10:C, 2d10:D, 2d11:A, 2d11:B, 2d11:C, 2d11:D, 2emt:A, 2emt:B, 1gc6:A, 1j19:A, 3x23:A, 2yvc:A, 2yvc:B, 2yvc:C, 2zpy:A
6 6h5l:B 220 98 0.0885 0.1227 0.2755 1.8
7 6fb3:A 1836 38 0.0426 0.0071 0.3421 2.8 6fb3:B, 6fb3:C, 6fb3:D, 6ska:A, 6ske:A, 6ske:C
8 7puk:A 425 53 0.0525 0.0376 0.3019 8.8 7puj:A, 7puk:C
9 2io4:B 246 56 0.0590 0.0732 0.3214 9.2 2io4:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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