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BioLiP
>protein
EKRVCRFCLTEQKLASIFEANLPLQIMAITAIEVYAGDGMPGHICLECRLLFEHCYRFKQMCKRAETLLRQYPLTGNWPS
PLEKPRAPIS

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7pok:A 98 97 0.9889 0.9082 0.9175 7.16e-61 7pok:B, 7pok:C, 7pok:D
2 7tvb:A 558 60 0.2111 0.0341 0.3167 0.46 7tva:A, 7tva:B, 7ubt:A, 7uc6:A, 7uc7:A
3 6lpw:B 436 37 0.1444 0.0298 0.3514 1.3
4 1nd6:B 343 44 0.1889 0.0496 0.3864 2.2 1cvi:A, 1cvi:B, 1cvi:C, 1cvi:D, 2hpa:A, 2hpa:B, 2hpa:D, 1nd5:A, 1nd5:B, 1nd5:C, 1nd5:D, 1nd6:A, 1nd6:C, 1nd6:D
5 6yv8:A 346 36 0.1111 0.0289 0.2778 3.1 6yv8:B, 6yv9:A, 6yv9:B
6 3u5m:E 173 32 0.1111 0.0578 0.3125 3.2
7 4euk:A 136 20 0.1000 0.0662 0.4500 3.3
8 3u5o:C 195 37 0.1111 0.0513 0.2703 5.1 8bd8:A, 8bd9:A, 8bdy:A, 5mr8:A, 3u5m:A, 3u5m:B, 3u5m:C, 3u5m:D, 3u5m:F, 3u5m:G, 3u5m:H, 3u5m:I, 3u5m:K, 3u5m:J, 3u5m:L, 3u5n:A, 3u5n:B, 3u5o:A, 3u5o:B, 3u5o:D, 3u5o:E, 3u5o:F, 3u5o:G, 3u5o:H, 3u5p:A, 3u5p:B, 3u5p:C, 3u5p:D, 3u5p:E, 3u5p:F, 3u5p:G, 3u5p:H, 7zdd:A
9 2ww8:A 815 21 0.1111 0.0123 0.4762 7.9
10 6fp5:B 86 32 0.1222 0.1279 0.3438 9.0 6fp5:A
11 5c4i:E 312 18 0.1111 0.0321 0.5556 9.3 5c4i:B, 5exd:E, 5exe:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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