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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITN
QRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELL
FGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNTRIPISGIAGDQQ
AALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLIDSEY
FATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGG
AVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVK
RAMAWEEHD

The query sequence (length=489) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1bu6:Y 499 499 0.9980 0.9780 0.9780 0.0 1bo5:O, 1bo5:Z, 1bot:O, 1bot:Z, 1bu6:O, 1bu6:Z, 1bu6:X, 1bwf:Y, 1bwf:O, 3ezw:A, 3ezw:B, 3ezw:E, 3ezw:G, 3ezw:C, 3ezw:D, 3ezw:F, 3ezw:H, 1gla:G, 1glb:G, 1glc:G, 1gld:G, 1gle:G, 1glf:O, 1glf:X, 1glf:Y, 1glf:Z, 1glj:Y, 1glj:O, 1gll:Y, 1gll:O
2 3ge1:A 499 489 0.6155 0.6032 0.6155 0.0 3ge1:B, 3ge1:C, 3ge1:D
3 6ude:B 495 493 0.6176 0.6101 0.6126 0.0 6ude:A, 6ude:C, 6ude:D
4 3h3n:X 501 489 0.5706 0.5569 0.5706 0.0 3d7e:O, 3d7e:X, 3flc:O, 3flc:X, 3h3n:O, 3h3o:O, 3h3o:X, 3h3o:B, 3h3o:C, 3h45:X, 3h45:O, 3h45:C, 3h45:D, 3h46:X, 3h46:O, 1xup:O, 1xup:X
5 6k76:A 485 488 0.5726 0.5773 0.5738 0.0 6k76:B
6 5azi:A 513 507 0.4622 0.4405 0.4458 1.31e-137 5azi:B, 5azi:C, 5azi:D, 5azj:A, 5azj:B, 5azj:C, 5azj:D, 5gn5:A, 5gn5:B, 5gn5:C, 5gn5:D, 5gn6:A, 5gn6:B, 5gn6:C, 5gn6:D, 6j9q:A, 6j9q:B, 6j9q:C, 6j9q:D, 6j9v:A, 6j9v:B, 6jaf:A, 3wxj:A, 3wxj:B, 3wxj:C, 3wxj:D, 3wxk:A, 3wxk:B, 3wxk:C, 3wxk:D, 3wxl:A, 3wxl:B, 3wxl:C, 3wxl:D
7 2w41:B 507 499 0.4151 0.4004 0.4068 1.85e-121 2w40:A, 2w40:B, 2w40:C, 2w40:D, 2w41:A
8 6zq4:F 512 507 0.4417 0.4219 0.4260 1.43e-119 6zq4:A, 6zq4:B, 6zq4:C, 6zq4:D, 6zq4:E, 6zq4:G, 6zq4:H, 6zq6:A, 6zq6:B, 6zq6:C, 6zq6:D, 6zq7:A
9 3ll3:A 492 486 0.2413 0.2398 0.2428 4.33e-32 3ll3:B
10 5ya1:A 478 498 0.2597 0.2657 0.2550 7.01e-25 5ya1:B, 5ya2:A, 5ya2:B
11 2itm:A 476 483 0.2393 0.2458 0.2422 1.84e-24 2itm:B
12 3kzb:A 498 480 0.2086 0.2048 0.2125 4.11e-09 3hz6:A
13 3l0q:A 541 180 0.0920 0.0832 0.2500 6.19e-09
14 3l0q:A 541 124 0.0695 0.0628 0.2742 3.83e-08
15 3qdk:A 546 143 0.0859 0.0769 0.2937 4.05e-07
16 3i8b:A 506 422 0.1881 0.1818 0.2180 1.44e-04
17 5htv:A 424 185 0.0838 0.0967 0.2216 0.016 5htx:A
18 8fne:A 525 109 0.0593 0.0552 0.2661 0.25 8fne:B, 8fne:C, 8fne:D, 8fv5:A, 8fv5:B, 8fv5:C, 8fv5:D, 8fv5:I, 8fv5:J, 8fv5:K, 8fv5:L, 8fv5:M, 8fv5:N, 8fv5:O, 8fv5:P, 8fv5:Q, 8fv5:R, 8fv5:S, 8fv5:T
19 2cgj:A 479 87 0.0470 0.0480 0.2644 0.58 2cgl:A, 2uyt:A
20 2cgj:A 479 205 0.0879 0.0898 0.2098 1.3 2cgl:A, 2uyt:A
21 5da0:A 467 101 0.0532 0.0557 0.2574 0.75
22 7am2:CA 537 145 0.0798 0.0726 0.2690 1.0
23 3b9x:C 283 101 0.0552 0.0954 0.2673 4.5
24 3mkm:A 311 101 0.0552 0.0868 0.2673 4.9 3b9x:A, 3b9x:B, 3b9x:D, 3mkm:B, 3mkm:C, 3mkm:D, 3mkn:A, 3mkn:B, 3mkn:C, 3mkn:D, 1q8f:A, 1q8f:B, 1q8f:C, 1q8f:D
25 5frp:A 677 79 0.0511 0.0369 0.3165 6.0 5frp:B, 5frs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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