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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EIVKIPVVVHVVWNEEEENISDAQIQSQIDILNKDFRKLNSDVSQVPSVWSNLIADLGIEFFLATKDPNGNQTTGITRTQ
TSVTFFTTSDEVKFASSGGEDAWPADRYLNIWVCHVLKSEIGQDILGYAQFPGGPAETDGVVIVDAAFGTTGTALPPFDK
GRTATHEIGHWLNLYHIWGDELRFEDPCSRSDEVDDTPNQADPNFGCPSYPHVSCSNGPNGDMFMNYCDYVDDKCMVMFT
QGQATRVNACLDGPRSSFL

The query sequence (length=259) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8cdb:A 306 259 0.9923 0.8399 0.9923 0.0 8cd8:A, 8cd8:C, 8cdb:B, 8cdb:C, 8cdb:D, 8cdb:E, 8cdb:F, 8cdb:G, 8cdb:H, 8cdb:I, 8cdb:J, 8cdb:K, 8cdb:L, 8cdb:M, 8cdb:N, 2cki:A, 2cki:B, 2j83:A, 2j83:B, 3lum:A, 3lum:B, 3lum:C, 3lum:D, 3lun:A, 3lun:B
2 6r7u:B 308 255 0.5290 0.4448 0.5373 2.58e-89 7od0:AAA, 7od0:BBB, 7od0:CCC, 7od0:DDD, 7od0:EEE, 7od0:FFF, 6r7u:A, 6r7v:A, 6r7w:A
3 8sl1:A 843 268 0.2587 0.0795 0.2500 3.04e-06
4 8hgg:C 1484 130 0.1467 0.0256 0.2923 3.18e-05 8hgg:D, 8hgh:A, 8hgh:B
5 8a7e:C 1524 130 0.1429 0.0243 0.2846 8.40e-05 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
6 7ufg:B 1182 130 0.1429 0.0313 0.2846 1.32e-04 8d8o:B
7 7ufg:A 1151 130 0.1429 0.0321 0.2846 1.41e-04
8 1wni:A 198 38 0.0579 0.0758 0.3947 1.4
9 7tbj:A5 1276 38 0.0463 0.0094 0.3158 3.7 5hax:A, 5hb0:B, 5hb0:C, 5hb0:A, 7tbi:A1, 7tbi:A2, 7tbi:A3, 7tbi:A4, 7tbj:A1, 7tbj:A3, 7tbj:A6, 7tbk:A1, 7tbk:A3, 7tbk:A5, 7tbk:A6, 7tbl:A1, 7tbl:A3, 7tbl:A5, 7tbl:A6, 7tbm:A1, 7tbm:A3, 7tbm:A5, 7tbm:A6
10 7tbj:A2 1269 38 0.0463 0.0095 0.3158 3.8 7tbj:A4, 7tbk:A2, 7tbk:A4, 7tbl:A2, 7tbl:A4, 7tbm:A2, 7tbm:A4
11 7sva:A 792 61 0.0695 0.0227 0.2951 3.9 7swf:A, 7swq:A
12 3rg0:A 292 61 0.0734 0.0651 0.3115 6.2
13 5hb0:D 502 38 0.0463 0.0239 0.3158 6.6
14 4kx4:A 217 31 0.0502 0.0599 0.4194 7.0 7d9l:A, 7dkp:A, 7dkp:B, 7dkp:C, 7dkp:D
15 1fdj:A 363 70 0.0656 0.0468 0.2429 9.5 1fdj:B
16 8gap:H 384 42 0.0502 0.0339 0.3095 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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