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BioLiP
>protein
EILKKPVTGRSVWQRAQVEDASQWTYVLDEGMRAEILEAAERINEQGLTVWDLDRKAVPLERAGKLVAQCVEQLEHGFGL
AMLRGVPTEGLTVAESQVVMGVVGLHLGTAVAQNGHGDRVVSIPWHSDAPDIAALLCLTQEFHVASAMHIYNTLLQEAPE
LLGLYYAGVFFDYRGEEPPGEPPAYRNAIFGYHNGQLSCRYFLRNFADSGTAKLGFEQPEVEKLALDTFEEIASRPENHV
SMRLEPGDMQLVDDNVTVHRRHLLRLWINV

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5eqn:A 270 270 1.0000 1.0000 1.0000 0.0 5eqn:B
2 7n7v:A 321 260 0.2667 0.2243 0.2769 7.86e-26 7n7v:B
3 6npb:B 378 144 0.1370 0.0979 0.2569 0.11 6npb:A, 6npc:A, 6npc:B, 6npd:A, 6npd:B
4 8ix7:B 221 38 0.0444 0.0543 0.3158 0.33 8ix7:A
5 4zah:A 370 70 0.0889 0.0649 0.3429 0.65 4zah:B, 4zah:C, 4zah:D, 4zah:E, 4zah:F, 4zah:G, 4zah:H
6 4ri6:A 214 43 0.0444 0.0561 0.2791 2.4 4ri6:B, 4ri7:A, 4ri7:B
7 2og6:A 323 48 0.0667 0.0557 0.3750 4.0 2og7:A
8 8b8m:B 682 154 0.1259 0.0499 0.2208 4.7
9 6nb3:A 1169 52 0.0778 0.0180 0.4038 5.2 5gmq:A, 6j11:A, 6j11:B, 6j11:C, 7m5e:C, 7m5e:E, 7m5e:A, 6nb4:A, 6pxh:A, 6pxh:B, 6q04:C, 6q04:A, 6q04:B, 6q05:C, 6q05:A, 6q05:B, 6q06:C, 6q06:A, 6q06:B, 6q07:C, 6q07:A, 6q07:B, 7ymt:B, 7ymt:C, 7ymv:A, 7ymv:B, 7ymy:B, 7ymz:B, 7yn0:A, 7yn0:B, 7yn0:C
10 7xyk:A 290 87 0.0852 0.0793 0.2644 5.4 7cca:A, 7cca:B, 7xyj:A, 7xyj:B, 7xyj:C, 7xyj:D, 7xyk:B, 7xyk:C, 7xyk:D
11 8b8j:A 709 154 0.1259 0.0480 0.2208 5.5 8b8j:B, 8b8q:A, 8b8q:B, 8bc0:A, 6p46:A, 6p46:B, 8sun:A, 8sur:A, 8tag:A, 8tai:A, 8tal:A
12 6elq:X 630 40 0.0407 0.0175 0.2750 5.7 6elq:A, 6elq:B
13 3gg2:A 431 18 0.0407 0.0255 0.6111 6.5 3gg2:D, 3gg2:B, 3gg2:C
14 5dte:B 287 173 0.1333 0.1254 0.2081 6.6 5dte:A, 5dte:C, 5dte:D
15 1xzo:A 172 23 0.0370 0.0581 0.4348 6.6 1xzo:B
16 2y0p:C 856 15 0.0370 0.0117 0.6667 7.5 6r29:A, 6r29:B, 6r2a:A, 6r2a:B, 6r2b:B, 6r2b:C, 2y0p:A, 2y0p:B
17 8evo:B 242 59 0.0556 0.0620 0.2542 9.3 4cvy:A, 4cvy:B, 4cvy:C, 4cvy:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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