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BioLiP
>protein
EGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKARE

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gzb:A 91 71 0.9726 0.7802 1.0000 5.20e-49 5nnx:A, 5no6:N, 5no6:I
2 3r2q:A 202 36 0.1370 0.0495 0.2778 0.73
3 6ks6:Q 548 33 0.1781 0.0237 0.3939 2.2 6ks6:q, 4v81:H, 4v81:P, 4v81:h, 4v81:p, 4v8r:AQ, 4v8r:Aq, 4v8r:BQ, 4v8r:Bq, 4v94:H, 4v94:P, 4v94:h, 4v94:p, 7ylw:Q, 7ylw:q, 7ylx:Q, 7ylx:q, 7yly:Q, 7yly:q
4 7uoi:A 383 31 0.1918 0.0366 0.4516 2.2 8vkt:A
5 7tz4:A 530 43 0.2055 0.0283 0.3488 4.7 7tyb:A
6 7yg7:A 414 41 0.2055 0.0362 0.3659 5.3 7yg7:B, 7yg7:C, 7yg7:D, 7yg7:E, 7yg7:F, 7yg7:G, 7yg7:H, 7yg7:I, 7yg7:J, 7yg7:K
7 7ezx:O3 375 17 0.1233 0.0240 0.5294 5.4 7ezx:OO, 6kgx:b1, 6kgx:o1, 6kgx:b4, 6kgx:o4, 7liz:A, 7y4l:Y7, 7y4l:b7, 7y5e:YP, 7y5e:bP, 7y7a:YL, 7y7a:bL, 7y7a:bU, 7y7a:YU
8 6rxt:UR 447 34 0.1781 0.0291 0.3824 5.9 5oql:N, 6rxu:UR, 6rxv:UR, 6rxy:UR, 6rxz:UR

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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