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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EGLSIFVILVWLGLNVFLFVWYYRVYDIPPKFFYTRKLLGSALALARAPAACLNFNCMLILLPVCRNLLSFLRGSSSTRV
RRQLDRNLTFHKMVAWMIALHSAIHTIAHLFNVEWCVNARVNNSDPYSVALSELGDRQNESYLNFARKRIKNPEGGLYLA
VTLLAGITGVVITLCLILIITSSTKTIRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRGQTAESLAVHNITVCEQKISE
WGKIKECPIPQFAGNPPMTWKWIVGPMFLYLCERLVRFWRSQQKVVITKVVTHPFKTIELQMKKKGFKMEVGQYIFVKCP
KVSKLEWHPFTLTSAPEEDFFSIHIRIVGDWTEGLFNACGCDKQKLPKIAVDGPFGTASEDVFSYEVVMLVGAGIGVTPF
ASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTGWQKTLYGRPNWDNE
FKTIASQHPNTRIGVFLCGPEALAETLSKQSISNSESGPRGVHFIFNKE

The query sequence (length=529) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8x2l:B 525 529 0.9924 1.0000 0.9924 0.0 7u8g:A
2 8wej:B 569 561 1.0000 0.9297 0.9430 0.0 8gz3:B, 8kei:B
3 6wxv:A 1091 487 0.2665 0.1292 0.2895 2.93e-56 6wxr:A, 6wxu:C, 6wxu:A
4 5o0x:A 261 231 0.1890 0.3831 0.4329 1.24e-54 8cak:A, 8cal:A, 8cao:A, 8cap:A, 8cap:E, 8cap:B, 8cap:C, 8cb0:A
5 7d3e:C 1380 501 0.2722 0.1043 0.2874 1.09e-53 7d3e:A, 7d3f:C, 7d3f:A
6 8u87:A 621 558 0.2949 0.2512 0.2796 3.96e-53 8u7y:A, 8u7y:B, 8u85:A, 8u85:C, 8u86:A, 8u86:C, 8u87:C
7 5o0t:A 206 170 0.0813 0.2087 0.2529 5.71e-08
8 5ksw:B 262 104 0.0567 0.1145 0.2885 4.49e-05 5ksw:D, 5ue9:B, 5ue9:D
9 4ylf:A 276 137 0.0718 0.1377 0.2774 1.26e-04 4ylf:C, 4yry:A, 4yry:C
10 8qq7:A 399 228 0.0945 0.1253 0.2193 2.60e-04 8qq1:C, 8qq1:F, 8qq1:G, 8qq5:A, 8qq5:B, 8qq5:C, 8qt6:A, 8qt7:A, 8qt9:A, 8qta:A
11 1cqx:A 403 101 0.0435 0.0571 0.2277 0.27 1cqx:B, 3ozu:A, 3ozv:B, 3ozv:A, 3ozw:A, 3ozw:B
12 1krh:A 337 115 0.0586 0.0920 0.2696 0.41 1krh:B
13 4b4d:A 256 245 0.1153 0.2383 0.2490 0.54
14 7bbv:A 298 138 0.0586 0.1040 0.2246 0.79 7bbv:B
15 8gpm:A 193 59 0.0321 0.0881 0.2881 2.1 8gpp:A, 8gpp:B, 8gpp:C
16 3u5m:E 173 38 0.0302 0.0925 0.4211 4.7
17 2eix:A 243 212 0.0832 0.1811 0.2075 5.9 2eix:B
18 8ix7:B 221 88 0.0397 0.0950 0.2386 7.1 8ix7:A
19 3wpd:A 752 115 0.0548 0.0386 0.2522 9.9 3wpc:A, 3wpc:B, 5y3j:A, 5y3j:B, 5y3k:A, 5y3k:B, 5y3l:A, 5y3l:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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