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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EGDGSAPGGSVWQTTDYIALSMVVYRTAIKLRNFVNIRGLTPTEMIVIPWNVMRFYCEYNTGTYGLSGNVHHKNYSMLLA
CKAHRPTKVGYTLSNLILTSDELVSTGGTLGTTTTFNTSPYMIHSIDDQQCLSKVYPKTDTVWPVSSMRELDYVASTVSG
DNAIIPSTIFNKNRYWKQGDDALHFSHDLDLGFWFGSDYGNAYVPQNNDSMNAVGTIPTSKHINVRGVNNRGMAGHYLSF
PPIRTNDGQFKLNAQFTLETEIEFEFRLWEQGVQGINSVHTNLNPANDSLWIQSYGSLVSITESKINNIQFGPTCPRVDA
RNKGGKMSMLFDHH

The query sequence (length=334) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6wh3:A 334 334 1.0000 1.0000 1.0000 0.0 6wh3:B, 6wh3:C, 6wh3:D, 6wh3:E, 6wh3:F, 6wh3:G, 6wh3:H, 6wh3:I, 6wh3:J, 6wh3:K, 6wh3:L, 6wh3:M, 6wh3:N, 6wh3:O, 6wh3:P, 6wh3:Q, 6wh3:R, 6wh3:S, 6wh3:T, 6wh3:U, 6wh3:V, 6wh3:W, 6wh3:X, 6wh3:Y, 6wh3:Z, 6wh3:8, 6wh3:7, 6wh3:6, 6wh3:5, 6wh3:4, 6wh3:3, 6wh3:a, 6wh3:b, 6wh3:c, 6wh3:d, 6wh3:e, 6wh3:f, 6wh3:g, 6wh3:h, 6wh3:i, 6wh3:j, 6wh3:k, 6wh3:l, 6wh3:m, 6wh3:n, 6wh3:o, 6wh3:p, 6wh3:q, 6wh3:r, 6wh3:s, 6wh3:t, 6wh3:u, 6wh3:v, 6wh3:w, 6wh3:x, 6wh3:y, 6wh3:z, 6wh3:1, 6wh3:2
2 5x9u:A 494 33 0.0329 0.0223 0.3333 1.1 5x9u:B, 5x9u:C, 5x9u:D, 5x9v:A, 5x9v:B, 5x9v:C, 5x9v:D
3 8bam:A 525 90 0.0778 0.0495 0.2889 1.2 8bam:B, 8bap:A, 8bap:B, 8bap:C, 8bap:D, 8bap:E, 8bap:F, 8bap:G, 8bap:H, 8bap:I, 8bap:J, 8bap:K, 8bap:L, 8bap:M, 8bap:N, 8bap:O, 8bap:P, 5fxd:A, 5fxd:B, 5fxe:A, 5fxe:B, 5fxf:A, 5fxf:B, 5fxp:A, 5fxp:B, 7ywu:A, 7ywu:B, 7ywu:C, 7ywu:D, 7ywu:E, 7ywu:F, 7ywu:G, 7ywu:H, 7ywv:A, 7ywv:B, 7ywv:C, 7ywv:D, 7ywv:E, 7ywv:F, 7ywv:G, 7ywv:H
4 3uhf:A 255 124 0.0868 0.1137 0.2339 1.9 3uhf:B, 3uho:A, 3uho:B
5 5m7h:A 420 98 0.0659 0.0524 0.2245 2.7 4dcs:A, 4dct:A, 4dcu:A, 2hjg:A, 5mbs:A, 5x4b:A, 5x4b:B
6 1mdx:A 366 40 0.0449 0.0410 0.3750 5.0 1mdo:A, 1mdz:A, 4oca:A
7 6m73:A 364 58 0.0449 0.0412 0.2586 6.1 6m74:A
8 3n7x:A 299 196 0.1198 0.1338 0.2041 7.5
9 8j0t:C 534 62 0.0389 0.0243 0.2097 8.5 8j0s:A, 8j0s:B, 8j0s:C, 8j0t:A, 8j0t:B, 8jr0:A, 8jr0:B, 8jr0:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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