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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EGCLEYETQLRRQFSLQHVRVIPGLDVGGRLGIGAAHMLMSLLQPQQMLAIGFGEATMNTLQRLSGFISSQQIRLVTLSG
GVGSYMTGIGQLNAACSVNIIPAPLRASSADIARTLKNENCVKDVLLAAQAADVAIVGIGAVSQQDDATIIRSGYISQGE
QLMIGRKGAVGDILGYFFDAKGDVVTNIKIHNELIGLPLSALKTIPVRVGVAGGENKAEAIAAAMKGGYINALVTDQDTA
AAILRS

The query sequence (length=246) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4l5j:A 308 249 1.0000 0.7987 0.9880 1.82e-176 4l4z:A, 4l4z:B, 4l50:A, 4l50:B, 4l51:A, 4l51:B, 4l5j:B, 4l5j:C, 4l5j:D
2 8r7y:C 312 241 0.2724 0.2147 0.2780 1.21e-21 7bhy:A, 7bhy:B, 7bhy:C, 4oqp:A, 8r7y:D, 8r7y:A, 8r7y:B
3 8r3g:A 335 128 0.1789 0.1313 0.3438 1.71e-08 3bxf:A, 3bxg:A, 3bxg:B, 3bxh:A, 3bxh:B, 2okg:B, 7oyk:BBB, 7oyk:AAA, 7oyk:CCC, 7oyk:DDD, 8r3g:B, 8r3g:D, 8r3g:C
4 1sf2:A 425 67 0.0732 0.0424 0.2687 2.6 1sf2:B, 1sf2:C, 1sf2:D, 1sff:A, 1sff:B, 1sff:C, 1sff:D, 1szk:A, 1szk:B, 1szk:C, 1szk:D, 1szs:A, 1szs:B, 1szs:C, 1szs:D, 1szu:A, 1szu:B, 1szu:C, 1szu:D
5 6int:A 413 56 0.0610 0.0363 0.2679 4.5 6int:B, 6int:C, 6int:D, 6int:E, 6int:F, 6int:G, 6int:H
6 3nqy:B 307 42 0.0569 0.0456 0.3333 4.7 3nqx:A, 3nqz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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