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BioLiP
>protein
EFNVVPYYSWFSGITQFQKGKEFEFVEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGQLLPRWYFYYLGTGPHAKDQY
GTDIDGVYWVASNQADVNTPADIVDRDPSSDEAIPTRFPPGTVLPQGYYIEG

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4kxj:A 135 134 1.0000 0.9778 0.9851 8.76e-94 4li4:A, 4lm7:A, 4lm9:A, 4lmc:A, 4lmt:A
2 7acs:A 140 128 0.4545 0.4286 0.4688 7.88e-30 7act:A, 8iv3:D, 8j6x:A, 8j6x:D, 6vyo:A, 6vyo:B, 6vyo:C, 6vyo:D, 6wkp:B, 6wkp:C, 6wkp:D, 7xwz:A, 7xwz:B, 7xx1:A, 7xx1:B, 7xx1:C, 7xx1:D
3 6lz8:B 130 126 0.4091 0.4154 0.4286 7.91e-27 6kl5:A, 6kl6:B
4 6lz8:D 112 124 0.3712 0.4375 0.3952 2.73e-22 7dyd:D, 6kl5:C, 6kl6:D, 6lnn:D, 6lz6:D
5 6wkp:A 103 121 0.3788 0.4854 0.4132 6.56e-21
6 8em7:A 4378 23 0.0833 0.0025 0.4783 1.5 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
7 8uw3:A 1265 49 0.1061 0.0111 0.2857 1.7 7n8s:A, 7n94:A, 7n94:B, 8sp5:A, 8sp5:B, 8sp7:A, 8sxt:A, 8sxu:A, 1vyb:B
8 8em4:A 3818 23 0.0833 0.0029 0.4783 1.8 8em4:B
9 5oe3:A 394 53 0.1515 0.0508 0.3774 2.8 5oe3:B, 5oe3:C, 5oe3:D, 5oe4:A, 5oe4:B, 5oe5:A, 5oe6:A, 5oe6:B, 5oe6:C, 5oe6:D
10 5k8e:A 473 35 0.0985 0.0275 0.3714 3.5 5l6f:A, 5l6g:A
11 2ixu:A 338 64 0.1136 0.0444 0.2344 5.9 2ixv:A, 2j8f:A, 2j8g:A, 1oba:A
12 2itm:A 476 58 0.1439 0.0399 0.3276 6.1 2itm:B
13 4wv3:B 518 85 0.2045 0.0521 0.3176 6.1 4wv3:A
14 5wu3:B 485 47 0.1136 0.0309 0.3191 8.3 5wu2:A, 5wu2:B, 5wu3:A, 5wu4:A, 5wu4:B
15 3c5m:B 378 94 0.1515 0.0529 0.2128 8.8 3c5m:A, 3c5m:C
16 6azq:G 226 58 0.1288 0.0752 0.2931 9.4 6azq:H, 6azq:A, 6azq:B, 6azq:C, 6azq:D, 6azq:E, 6azs:B, 6azs:D
17 7m7f:A 1390 16 0.0682 0.0065 0.5625 9.7 2fr0:A, 2fr1:A, 7m7i:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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