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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHELKEVLNKVK

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2q5z:B 94 80 0.9875 0.8404 0.9875 4.76e-53 2q5z:A, 2q73:A, 2q73:B, 2q73:C, 2q73:D, 2q9l:A, 2q9l:B, 2q9l:C, 2q9l:D
2 7mu5:A 110 63 0.2750 0.2000 0.3492 0.001 7mu5:E, 7mu5:B, 7mu5:H, 7mu5:C, 7mu5:D, 7mu5:F, 7mu5:G
3 6sqw:A 114 66 0.2625 0.1842 0.3182 0.007 2oig:B, 2oig:A, 2oig:D, 6sqw:D, 6sqy:A, 6sqy:D, 6sqz:A, 6sqz:D
4 5ie9:C 95 64 0.2625 0.2211 0.3281 0.012 5ie9:A, 5ie9:B, 5ie9:D
5 4qgp:A 108 50 0.2250 0.1667 0.3600 0.11 4qgp:B
6 4cg4:C 376 27 0.1500 0.0319 0.4444 0.61 4cg4:D, 4cg4:E, 4cg4:F
7 4po6:A 475 67 0.2500 0.0421 0.2985 0.63
8 7cdw:A 683 53 0.2625 0.0307 0.3962 0.63 7cdw:B
9 7ody:C 100 68 0.2625 0.2100 0.3088 0.67 7ody:A, 7ody:B, 7ody:D
10 3tr9:A 277 88 0.3250 0.0939 0.2955 2.5 3tr9:B, 3tr9:C, 3tr9:D
11 4v4n:AZ 99 56 0.2250 0.1818 0.3214 4.4 4v6u:BZ
12 4y9d:A 235 25 0.1500 0.0511 0.4800 5.1
13 2ivn:A 325 42 0.1875 0.0462 0.3571 5.2 2ivo:A, 2ivo:B, 2ivo:C, 2ivp:A
14 1ky8:A 499 24 0.1375 0.0220 0.4583 7.1 1uxn:A, 1uxp:A, 1uxq:A, 1uxr:A, 1uxt:A, 1uxu:A, 1uxv:A
15 4qfh:B 611 25 0.1375 0.0180 0.4400 8.3 4qfh:A
16 4ilk:A 337 26 0.1500 0.0356 0.4615 9.3 4ilk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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