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BioLiP
>protein
EEYKCYCTDTYSDCPGFCKTCKAEFGKYICLDLISPNDCVK

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1bi6:H 41 41 1.0000 1.0000 1.0000 2.11e-24 2bi6:H
2 7fin:R 380 37 0.2683 0.0289 0.2973 0.47 7dty:R, 7fiy:R, 7rbt:R, 7vab:R, 8yw4:R
3 7p5z:G 213 16 0.1220 0.0235 0.3125 0.99
4 5g5s:A 692 33 0.3171 0.0188 0.3939 1.2 5g5t:A
5 3h0g:M 1476 16 0.1951 0.0054 0.5000 3.5
6 7d4i:RJ 738 19 0.1951 0.0108 0.4211 4.1 7d5t:RJ, 6lqs:RJ, 6lqt:RJ
7 7krg:F 270 25 0.2439 0.0370 0.4000 5.2 3gdf:A, 3gdf:B, 7krg:A, 7krg:B, 7krg:C, 7krg:D, 7krg:E, 7krg:G, 7krg:H
8 7ajt:CL 781 16 0.1951 0.0102 0.5000 5.3 7d5s:RJ, 6zqa:CL, 6zqb:CL, 6zqc:CL
9 7suk:SI 802 16 0.1951 0.0100 0.5000 5.3 7d63:RJ, 6ke6:RJ, 6lqp:RJ, 6lqq:RJ, 6lqr:RJ, 6lqu:RJ, 6lqv:RJ, 5wlc:SI
10 7aju:CL 808 16 0.1951 0.0099 0.5000 5.3 6zqd:CL, 6zqe:CL, 6zqf:CL, 6zqg:CL

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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