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BioLiP
>protein
EEQTFSWSEISQHTSANSLWVVVRDKTSPGSPLRVYDVTNFQKTHPGGHLILLKYAGTECSRAFAAVGHSKYAIKRMSQY
RIGIAEAD

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7bwh:A 88 88 1.0000 1.0000 1.0000 1.27e-63
2 3ner:B 91 79 0.3523 0.3407 0.3924 1.31e-14 3ner:A
3 3ozz:B 82 79 0.3068 0.3293 0.3418 3.43e-13
4 2ibj:A 86 79 0.2955 0.3023 0.3291 3.62e-13
5 1awp:A 86 79 0.3068 0.3140 0.3418 5.90e-13 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
6 2i89:A 90 79 0.3182 0.3111 0.3544 1.87e-12 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
7 1aw3:A 94 79 0.3182 0.2979 0.3544 2.89e-11 1axx:A, 2axx:A, 1b5a:A, 1b5b:A, 1bfx:A, 1blv:A, 1do9:A, 1mny:A
8 2i96:A 108 84 0.3068 0.2500 0.3214 2.35e-10 4hin:A, 4hin:B, 4hin:C, 4hin:D, 2m33:A
9 1hko:A 104 79 0.2841 0.2404 0.3165 2.76e-10 1aqa:A, 1cyo:A, 1ehb:A, 1es1:A, 1f03:A, 1f04:A, 1i5u:A, 1ib7:A, 1j0q:A, 1jex:A, 1lqx:A, 1lr6:A, 1m20:A, 1m2i:A, 1m2m:A, 1m59:A, 1nx7:A, 1sh4:A, 1u9m:A, 1u9m:B, 1u9m:C, 1u9m:D, 1u9m:E, 1u9m:F, 1u9u:A, 3x32:A, 3x33:A, 3x34:A, 3x35:A
10 4b8n:B 90 74 0.2386 0.2333 0.2838 4.57e-08 4b8n:A, 4b8n:C, 4b8n:D
11 1x3x:A 82 86 0.2955 0.3171 0.3023 3.68e-07 1x3x:B
12 8tgb:A 108 62 0.2273 0.1852 0.3226 1.10e-06 8tgb:B
13 1cxy:A 81 83 0.2500 0.2716 0.2651 4.25e-06
14 1mj4:A 79 78 0.3068 0.3418 0.3462 2.28e-05
15 1kbi:A 504 63 0.2159 0.0377 0.3016 1.91e-04 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
16 3lf5:A 87 60 0.1818 0.1839 0.2667 5.50e-04 3lf5:B
17 1sox:A 463 56 0.2273 0.0432 0.3571 0.001 2a9a:A, 2a9a:B, 2a9b:A, 2a9c:A, 2a9c:B, 2a9d:A, 2a9d:B, 3hbp:A, 3hbq:A, 1sox:B
18 7bmu:A 115 50 0.1818 0.1391 0.3200 0.11 7bmv:A, 7bmw:A, 7bmx:A, 7bmy:A
19 6ysy:A 767 20 0.1250 0.0143 0.5500 1.3
20 8z1r:B 516 49 0.1477 0.0252 0.2653 2.3 8z1r:A
21 4alc:A 166 39 0.1250 0.0663 0.2821 7.3 4ale:A, 4alq:A, 4alr:A, 4als:A, 4alt:A
22 6twe:A 172 36 0.1023 0.0523 0.2500 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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