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BioLiP
>protein
EEGPMIEQLSKMFFTTKHRWYPHGRYHRCRKNLNPPKDR

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8k2a:Lp 97 39 1.0000 0.4021 1.0000 3.71e-25 8k2b:Lp, 7og4:a, 8xt0:Lp, 8xt1:Lp, 8xt2:Lp, 8xt3:Lp, 6zs9:a, 6zsa:a, 6zsb:a, 6zsc:a, 6zsd:a, 6zse:a, 6zsg:a
2 6i9r:a 83 39 1.0000 0.4699 1.0000 4.78e-25 7a5f:a3, 7a5g:a3, 7a5h:a, 7a5i:a3, 7a5j:a, 7a5k:a3, 3j9m:a, 6nu2:a, 6nu3:a, 7o9k:a, 7o9m:a, 7of0:a, 7of2:a, 7of3:a, 7of4:a, 7of5:a, 7of6:a, 7of7:a, 7oi6:a, 7oi7:a, 7oi8:a, 7oi9:a, 7oia:a, 7oib:a, 7oic:a, 7oid:a, 7oie:a, 5ool:a, 5oom:a, 7pd3:a, 7qh6:a, 7qh7:a, 8qu5:a
3 7l08:a 108 39 1.0000 0.3611 1.0000 5.47e-25 8any:a, 3j7y:a, 7l20:a, 7odr:a, 7ods:a, 7odt:a, 8oir:Br, 8oit:Br, 8pk0:a, 7po4:a, 7qi4:a, 7qi5:a, 7qi6:a, 8qsj:a, 6vlz:a, 6vmi:a, 6zm5:a, 6zm6:a
4 6gaw:Bf 108 39 0.8205 0.2963 0.8205 2.11e-18 6gb2:Bf, 7nqh:Bf, 7nql:Bf, 7nsh:Bf, 7nsi:Bf, 7nsj:Bf, 8oin:Br, 8oiq:Br, 6ydp:Bf, 6ydw:Bf
5 5aj4:Bf 108 39 0.8205 0.2963 0.8205 2.60e-18
6 8byi:A 320 21 0.1795 0.0219 0.3333 1.5 8byi:B, 8byi:C, 8byi:D, 8byi:E
7 5wbj:A 1058 33 0.2821 0.0104 0.3333 6.1 5wbk:A, 5wbl:A
8 6f4v:A 341 18 0.2051 0.0235 0.4444 7.7
9 2zze:A 744 15 0.2308 0.0121 0.6000 7.9 2zze:B, 2zzf:A, 2zzg:A, 2zzg:B
10 4oxi:A 526 23 0.2051 0.0152 0.3478 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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