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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EEGLDFPEYDGVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD
AAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDSEHY
KAFKEAAEEFHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYE
TWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDA
DSVWMEMDDEEDLPSAEELEDWLEDVLEGEINT

The query sequence (length=353) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5crg:A 354 353 0.9632 0.9605 0.9632 0.0 5crd:A, 5cre:A, 5crg:B, 5crg:C, 5crg:D, 5crh:A, 5crh:B, 5kn0:A, 5kn0:B, 5kn0:C, 5kn0:D, 5kn1:A, 5kn1:B, 5kn1:C, 5kn2:A, 5kn2:B, 5kn2:C, 5kn3:A, 3trp:A, 3trq:A, 3uom:A, 3uom:B, 3uom:C, 3uom:D, 3uom:E, 3uom:F, 3us3:A, 3v1w:A
2 7f05:C 355 353 0.6969 0.6930 0.6969 1.39e-180 7f05:B, 7f05:A, 7f05:D
3 5xwm:D 368 136 0.0963 0.0924 0.2500 9.97e-08 5xwm:A, 5xwm:C, 5xwm:B
4 2atj:A 308 98 0.0737 0.0844 0.2653 0.31 1atj:A, 1atj:B, 1atj:C, 1atj:D, 1atj:E, 1atj:F, 2atj:B, 3atj:A, 3atj:B, 4atj:A, 4atj:B, 6atj:A, 7atj:A, 1gw2:A, 1gwo:A, 1gwt:A, 1gwu:A, 1gx2:A, 1gx2:B, 1h55:A, 1h57:A, 1h58:A, 1h5a:A, 1h5c:A, 1h5d:A, 1h5e:A, 1h5f:A, 1h5g:A, 1h5h:A, 1h5i:A, 1h5j:A, 1h5k:A, 1h5l:A, 1h5m:A, 1hch:A, 1kzm:A, 1w4w:A, 1w4y:A, 2ylj:A
5 6i7s:B 462 147 0.1105 0.0844 0.2653 0.35 6i7s:A
6 3lyb:B 137 73 0.0595 0.1533 0.2877 2.0
7 3fhm:A 136 72 0.0595 0.1544 0.2917 2.3 3fhm:D, 3fhm:B, 3fhm:C
8 6hq7:A 377 89 0.0623 0.0584 0.2472 4.0 6hq3:B, 6hq3:C, 6hq3:A, 6hq3:D, 6hq4:A, 6hq4:B, 6hq5:A, 6hq5:B, 6hq7:B
9 6te4:A 564 59 0.0453 0.0284 0.2712 4.0
10 2bvf:A 453 40 0.0453 0.0353 0.4000 6.0 2bvf:B, 2bvg:A, 2bvg:B, 2bvg:C, 2bvg:D, 2bvh:A, 2bvh:B, 2bvh:C, 2bvh:D
11 1z7e:D 644 37 0.0312 0.0171 0.2973 9.0 2bln:A, 2bln:B, 5j63:A, 5j63:B, 5j63:C, 5j63:D, 1z7e:A, 1z7e:B, 1z7e:C, 1z7e:E, 1z7e:F
12 5ayk:A 744 54 0.0397 0.0188 0.2593 9.8 5ayl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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