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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EEFQQIPDFYGCYLLQSISKRQSFYIGSTPNPVRRLRQHNGSLSRRDGTRPWEMVAIVYGFPSRIAALQFQHAWQHGYQT
RYVKTRKGGRSIHHKLAMITSLLKNEYFRYMDLTLHFFNQKVEEIWKNDKFNVSQNNYTVSLSQDALTEINNDTIDDIMD
VNEKNMELVQNLYSTTLAEKTKTLLLYKEKIDTGINTCQFCNKIINLFAFCRDTSCTFVSHLACAYRYFMSNEDTIIPQS
PKCPKCYTLLKWCDVIYYSIKLNKDNT

The query sequence (length=267) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xm5:A 267 267 1.0000 1.0000 1.0000 0.0 4xlg:A
2 7cq2:A 274 275 0.4682 0.4562 0.4545 2.20e-90
3 7cq3:A 298 291 0.4757 0.4262 0.4364 4.91e-90 7cq2:B, 7cq4:A
4 6sei:A 276 272 0.3071 0.2971 0.3015 1.01e-35 6sei:C
5 6seh:C 252 259 0.3071 0.3254 0.3166 2.09e-33 6seh:A
6 4zdt:C 70 57 0.0712 0.2714 0.3333 0.004 4zdt:A
7 5hvq:C 236 175 0.1236 0.1398 0.1886 0.007 5wy5:A
8 2ct0:A 74 59 0.0599 0.2162 0.2712 0.007
9 3ldf:A 380 58 0.0637 0.0447 0.2931 1.2
10 7od3:A 1012 53 0.0637 0.0168 0.3208 4.1 7od3:B, 7od3:C
11 3qe6:B 286 91 0.0787 0.0734 0.2308 4.4 3qe6:A
12 3jcm:G 734 118 0.1199 0.0436 0.2712 7.0 5zwm:N, 5zwo:N
13 6y2x:A 231 48 0.0524 0.0606 0.2917 7.0 6ir0:A, 6y22:A, 6y3j:A
14 8xuu:A 431 49 0.0599 0.0371 0.3265 7.8
15 8xus:B 1063 49 0.0599 0.0151 0.3265 8.1 8if2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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