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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EEDLRRRLKYFFMSPCDKFRAKGRKPCKLMLQVVKILVVTVQLILFGLSNQLAVTFREENTIAFRHLFLLGYSDGADDTF
AAYTREQLYQAIFHAVDQYLALPDVSLGRYAYVRGGGDPWTNGSGLALCQRYYHRGHVDPANDTFDIDPMVVTDCIQVDP
PERPSSYKNLTLKFHKLVNVTIHFRLKTINLQSLINNEIPDCYTFSVLITFDNKAHSGRIPISLETQAHIQECKHPSVFQ
HGDNSFRLLFDVVVILTCSLSFLLCARSLLRGFLLQNEFVGFMWRQRGRVISLWERLEFVNGWYILLVTSDVLTISGTIM
KIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYH
VKFRSLSMVSECLFSLINGDDMFVTFAAMQAQQGRSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKH

The query sequence (length=475) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5wj9:A 479 479 1.0000 0.9916 0.9916 0.0 6e7p:A, 6e7p:B, 6e7p:C, 6e7p:D, 6e7y:A, 6e7y:B, 6e7y:C, 6e7y:D, 6e7z:A, 6e7z:B, 6e7z:C, 6e7z:D, 7mgl:A, 7mgl:D, 7mgl:B, 7mgl:C, 7sq6:A, 7sq6:B, 7sq6:C, 7sq6:D, 7sq7:A, 7sq7:B, 7sq7:C, 7sq7:D, 7sq9:A, 7sq9:C, 7sq9:B, 7sq9:D, 5wj9:B, 5wj9:C, 5wj9:D
2 5w3s:A 485 479 0.6042 0.5918 0.5992 0.0 5w3s:B, 5w3s:C, 5w3s:D
3 5mkf:A 481 138 0.0589 0.0582 0.2029 0.085 8hk7:A, 8hk7:B, 8hk7:C, 8hk7:D, 5mke:A, 5mke:B, 5mke:C, 5mke:D, 5mkf:B, 5mkf:C, 5mkf:D, 6t9n:A, 6t9n:B, 6t9n:C, 6t9n:D, 6t9o:A, 6t9o:B, 6t9o:C, 6t9o:D
4 8eo6:A 268 56 0.0316 0.0560 0.2679 1.9 8eo6:B
5 8etp:D 441 63 0.0295 0.0317 0.2222 5.1 8eu3:D, 8euc:D, 8ev8:D, 8ev9:D, 8eva:D, 8evb:D, 8evc:D
6 7d7e:B 482 80 0.0337 0.0332 0.2000 6.9 7d7e:C, 7d7e:D, 7d7f:B, 7d7f:C, 7d7f:D
7 2x6k:A 550 83 0.0379 0.0327 0.2169 7.9 2x6f:A, 2x6f:B, 2x6i:A, 2x6i:B, 2x6j:A, 2x6j:B, 2x6k:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218