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BioLiP
>protein
EDANERIAELVKLEERQRIARDLHDTLGQKLSLIGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSMKGI
RLKDELINIKQILEAAIMFIYEEEENISLLNENILSMCLKEAVTNVVKHSQAKRVDIQQLWKEVVITVSDDGTFKGEENS
FSKGHGLLGMRERLEFANGSLHITENLTMAIPNNS

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ssj:A 219 205 1.0000 0.8904 0.9512 2.08e-131 3ehf:A, 3ehf:D, 3ehg:A, 3ehh:A, 3ehh:B, 3ehj:A, 3ehj:B, 3gie:A, 3gie:B, 3gif:A, 3gig:A, 3gig:B, 5iuj:A, 5iuj:B, 5iuj:D, 5iuj:E, 5iuk:A, 5iuk:B, 5iuk:D, 5iuk:E, 5iul:A, 5iul:B, 5iul:D, 5iul:E, 5ium:A, 5ium:B, 7ssi:A, 7ssi:B, 7ssi:D, 7ssi:E, 7ssj:C, 7ssj:D
2 8sbm:B 126 78 0.1179 0.1825 0.2949 0.003 8sbm:A, 3zxo:A, 3zxo:B
3 4gt8:A 133 75 0.0974 0.1429 0.2533 0.044
4 6qig:A 581 77 0.1077 0.0361 0.2727 0.074 3ghm:A, 3ghn:A, 3vn4:A
5 2xsj:A 436 69 0.1077 0.0482 0.3043 3.7 2xsj:D
6 6q8n:A 321 41 0.0769 0.0467 0.3659 4.2 6q8n:B
7 7oya:C1 348 113 0.1231 0.0690 0.2124 4.7 7oyb:C1
8 8k1o:B 215 59 0.0872 0.0791 0.2881 6.4 8k1o:C, 8k1p:B, 8k1p:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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