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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEK
DVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAAL

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3d9k:B 141 137 1.0000 0.9716 1.0000 3.64e-100 3d9k:A, 3d9l:A, 3d9l:B, 3d9m:A, 3d9m:B, 3d9n:A, 3d9n:B, 3d9o:B, 3d9p:A, 3d9p:B
2 6xkb:C 139 136 0.8029 0.7914 0.8088 1.22e-78 6xkb:B, 6xkb:A, 6xkb:E, 6xkb:D
3 1sza:B 140 119 0.2482 0.2429 0.2857 7.28e-07 2bf0:X
4 2mow:A 161 138 0.2336 0.1988 0.2319 8.00e-06 6gc3:A, 2lo6:A, 6o3w:A, 6o3w:B, 6o3x:A, 6o3x:B, 6o3x:C, 6o3y:A, 6o3y:B, 6o3y:C
5 4q94:A 129 90 0.1752 0.1860 0.2667 2.43e-04 9b9l:A, 4q94:B, 4q96:A, 4q96:B, 4q96:D, 4q96:E
6 4jxt:A 130 95 0.1679 0.1769 0.2421 4.65e-04
7 5lvf:A 142 136 0.2409 0.2324 0.2426 0.006 2l0i:A, 5m9d:A
8 4js4:A 468 40 0.0949 0.0278 0.3250 2.1 3c94:A, 4hcb:A, 4hcb:B, 4hcc:A, 4hcc:B, 3hl8:A, 3hp9:A, 4jrp:A, 4jrp:B, 4jrq:A, 4jrq:B, 4js4:B, 4js5:A, 4js5:B
9 2qxf:A 433 40 0.0949 0.0300 0.3250 2.2
10 7wbt:A 899 90 0.1314 0.0200 0.2000 2.5 7wbt:B, 7wbu:A
11 6itu:A 146 55 0.0803 0.0753 0.2000 3.9
12 2v64:A 210 89 0.1825 0.1190 0.2809 6.3 6f0x:Z, 1klq:A, 2qyf:A, 2qyf:C, 2v64:F, 2v64:C
13 2p20:A 641 38 0.1022 0.0218 0.3684 7.2 5jrh:A, 5jrh:B, 2p20:B, 2p2b:A, 2p2b:B, 2p2f:A, 2p2f:B, 2p2j:A, 2p2j:B, 2p2m:A, 2p2m:B, 2p2q:A, 2p2q:B, 1pg3:A, 1pg3:B, 1pg4:A, 1pg4:B
14 8hgg:C 1484 22 0.0949 0.0088 0.5909 7.5 8hgg:D, 8hgh:A, 8hgh:B
15 8a7e:C 1524 22 0.0949 0.0085 0.5909 7.5 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
16 3zxs:A 508 44 0.0949 0.0256 0.2955 9.1 3zxs:B, 3zxs:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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