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BioLiP
>protein
EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vd6:C 96 38 0.9744 0.3958 1.0000 9.67e-24 2l6y:A, 2l6z:A, 3vek:C, 3vek:F, 1y0j:A
2 6zfv:A 63 39 0.9487 0.5873 0.9487 1.85e-23 1gnf:A
3 4hca:A 99 38 0.8974 0.3535 0.9211 1.65e-21 4hc7:B
4 4hc7:A 108 38 0.8974 0.3241 0.9211 2.00e-21 3dfv:D, 3dfv:C, 3dfx:A, 3dfx:B, 4hc9:A
5 4hc7:A 108 36 0.4872 0.1759 0.5278 1.08e-07 3dfv:D, 3dfv:C, 3dfx:A, 3dfx:B, 4hc9:A
6 4gat:A 66 33 0.4872 0.2879 0.5758 2.72e-09 5gat:A, 6gat:A, 7gat:A, 2vus:I, 2vus:J, 2vus:K, 2vus:L, 2vus:M, 2vus:N, 2vus:O, 2vus:P, 2vut:I, 2vut:J, 2vut:K, 2vut:L, 2vut:M, 2vut:N, 2vut:O, 2vut:P, 2vuu:I, 2vuu:J, 2vuu:K, 2vuu:L, 2vuu:M, 2vuu:N, 2vuu:O, 2vuu:P
7 2m9w:A 63 34 0.4872 0.3016 0.5588 1.07e-08 8vg0:T, 8vg1:T
8 5o9b:A 68 35 0.4872 0.2794 0.5429 2.54e-08
9 2gat:A 66 35 0.4615 0.2727 0.5143 1.41e-07 1gat:A, 1gau:A, 3gat:A
10 8j48:A 38 33 0.4615 0.4737 0.5455 8.19e-06 8j48:D
11 2kae:A 56 32 0.3333 0.2321 0.4062 0.010
12 2d74:B 137 26 0.2821 0.0803 0.4231 0.15 2dcu:B
13 7obb:B 1130 35 0.3077 0.0106 0.3429 1.2 7ob9:B, 7oba:B, 7vba:B, 7vbb:B, 7vbc:B
14 6tmf:W 56 30 0.2821 0.1964 0.3667 2.0 6skf:Az, 6skg:Az, 6th6:Az
15 6m0q:A 504 18 0.2051 0.0159 0.4444 3.0 4fas:A, 4fas:C, 4fas:B, 1fgj:A, 1fgj:B, 6m0p:A, 6m0p:C, 6m0p:E, 6m0q:C, 6m0q:E, 6m0q:G, 6m0q:I, 6m0q:K, 4n4n:A, 4n4n:C, 4n4n:E, 4n4o:A, 4n4o:C, 4n4o:E
16 6kko:A 170 30 0.2821 0.0647 0.3667 3.5 6kko:B
17 2qmu:C 132 27 0.2308 0.0682 0.3333 3.6 5jb3:8
18 6sw9:C 61 30 0.2821 0.1803 0.3667 4.6 6swc:C, 6swd:C, 7zag:C, 7zah:C, 7zai:C, 7zhg:C
19 4ayb:B 1103 33 0.3333 0.0118 0.3939 5.6 3hkz:B, 3hkz:J, 2pmz:B, 2pmz:R, 4v8s:AR, 4v8s:BB, 2waq:B, 2wb1:B, 2wb1:R, 2y0s:B, 2y0s:R
20 4nv2:A 264 16 0.1795 0.0265 0.4375 6.1 3kp9:A, 4nv5:A, 4nv5:B, 4nv6:A
21 6jmt:D 350 35 0.2308 0.0257 0.2571 8.6 6jmt:C, 6jmt:E, 6jmt:F, 6jmt:A, 6jmt:B
22 4etz:B 289 14 0.2051 0.0277 0.5714 9.5 4dmz:A, 4dmz:B, 4dn0:A, 4etz:A, 4eu0:A, 4euv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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