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BioLiP
>protein
EAADVERVYAAMEEAAGLLGVACARDKIYPLLSTFQDTLVEGGSVVVFSMASGRHSTELDFSISVPTSHGDPYATVVEKG
LFPATGHPVDDLLADTQKHLPVSMFAIDGEVTGGFKKTYAFFPTDNMPGVAELSAIPSMPPAVAENAELFARYGLDKVQM
TSMDYKKRQVNLYFSELSAQTLEAESVLALVRELGLHVPNELGLKFCKRSFSVYPTLNWETGKIDRLCFAVISNDPTLVP
SSDEGDIEKFHNYATKAPYAYVGEKRTLVYGLTLSPKEEYYKLGAYYHITDVQRGLLKAFD

The query sequence (length=301) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7fhb:A 306 301 1.0000 0.9837 1.0000 0.0 1zb6:A, 1zcw:A, 1zdw:A, 1zdy:A
2 4ee7:A 290 295 0.3654 0.3793 0.3729 4.09e-64
3 5ynv:B 313 214 0.1894 0.1821 0.2664 3.12e-16 5y72:A, 5y72:B, 5y7c:A, 5y7c:B, 5y84:A, 5y84:B, 5ynt:A, 5ynt:B, 5ynu:A, 5ynu:B, 5ynv:A, 5ynw:A, 5ynw:B
4 5z43:A 292 216 0.1761 0.1815 0.2454 1.45e-10 5z43:B, 5z44:A, 5z44:B, 5z45:A, 5z45:B, 5z46:A, 5z46:B
5 2xlq:A 316 232 0.1827 0.1741 0.2371 8.97e-08 2xm7:A
6 1mpx:A 614 36 0.0465 0.0228 0.3889 0.78 1mpx:B, 1mpx:C, 1mpx:D
7 3ac0:A 841 92 0.0797 0.0285 0.2609 1.2 3ac0:B, 3ac0:C, 3ac0:D
8 6kdy:D 342 33 0.0365 0.0322 0.3333 2.3 8grd:B, 8gru:B, 8gru:D, 6kdy:B, 6kdy:F
9 9bh5:AD 211 90 0.0631 0.0900 0.2111 3.3 9cai:AD
10 8dvm:A 612 185 0.1528 0.0752 0.2486 3.4 4a0p:A, 8dvl:A, 8dvn:A
11 5fq9:B 247 118 0.0963 0.1174 0.2458 5.4 1fof:A, 1fof:B, 5fq9:A, 1h5x:A, 1h5x:B, 1h8y:A, 1h8y:B, 2hp5:A, 2hp5:B, 2hp5:C, 2hp5:D, 1k54:A, 1k54:B, 1k6r:A, 1k6r:B, 1k6s:A, 1k6s:B, 7l5t:A, 7l5t:B, 3lce:A, 3lce:B, 5mmy:B, 5mnu:A, 5mnu:B, 5mox:A, 5mox:B, 5moz:A, 5moz:B, 6rtn:A, 6rtn:B, 4s2o:A, 4s2o:B, 6skp:A, 6skp:B, 6skq:A, 6skq:B, 6skq:C, 6skq:D, 6skr:A, 6skr:B, 2wgi:A, 2wgi:B, 2wgv:A, 2wgv:B, 2wkh:A, 2wkh:B, 4wz5:A, 4wz5:B, 6zrg:A, 6zrh:A, 6zrh:B, 6zrh:C, 6zrh:D, 6zri:A, 6zri:B, 6zri:C, 6zri:D, 6zw2:A
12 3b2d:A 601 98 0.0764 0.0383 0.2347 7.7 3b2d:B
13 7z94:A 413 58 0.0698 0.0508 0.3621 8.2 7z4x:A, 7z97:A, 7z98:A, 7z99:A, 7zca:A
14 5f8f:B 361 48 0.0532 0.0443 0.3333 8.2 5f8e:A, 5f8e:B, 5f8f:A, 5f8f:C
15 8zmr:A 384 79 0.0731 0.0573 0.2785 8.8
16 5d2g:A 263 59 0.0664 0.0760 0.3390 8.9 5d2h:A, 5d2i:A, 5d2i:B, 5d2j:A, 5d2j:B, 5d2k:A, 5d2k:B
17 3csk:A 710 63 0.0664 0.0282 0.3175 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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