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BioLiP
>protein
DYVICEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKL
YLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQ

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ebt:K 172 115 0.9914 0.6686 1.0000 9.65e-83 7ad8:G, 8ebu:K, 8ebx:K, 8eby:K, 6j44:A, 6lae:A, 6lae:B, 6ro4:G, 1xpa:A
2 5a39:B 115 100 0.2759 0.2783 0.3200 7.36e-12 5a39:A, 5a3d:A, 5a3d:B, 5g32:A, 5g32:B, 5g33:A, 5g33:B, 5g34:A, 5g34:B, 5g35:A, 5g35:B, 5lcl:A, 5lcl:B, 5lcm:A, 5lcm:B
3 2epr:A 48 21 0.0948 0.2292 0.5238 3.0
4 5v3g:D 170 62 0.1552 0.1059 0.2903 3.6 5egb:A, 5eh2:F, 5eh2:E, 5ei9:E, 5ei9:F, 5v3g:A
5 7o9u:A 153 49 0.1293 0.0980 0.3061 4.3
6 2ytt:A 46 18 0.0862 0.2174 0.5556 8.1
7 8he5:O 516 31 0.1121 0.0252 0.4194 8.4
8 2lo3:A 44 21 0.0603 0.1591 0.3333 8.9
9 6tmf:W 56 24 0.0776 0.1607 0.3750 9.1 6skf:Az, 6skg:Az, 6th6:Az
10 2en7:A 44 18 0.0862 0.2273 0.5556 9.9
11 6lg0:B 444 38 0.1034 0.0270 0.3158 9.9 6lg0:A, 6lg0:C, 6lg0:D, 6lg0:E, 6lg0:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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