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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWD
KTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCNLSNKGFVYTKIKKNDRFVHVIGTHLQAESPASVRTNQLKEIQD
FIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWDATTNSIAKYNFPDSPAEYLDYIIA
SKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISM

The query sequence (length=288) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2dds:A 299 298 1.0000 0.9632 0.9664 0.0 2ddr:A, 2ddr:B, 2ddr:C, 2ddr:D, 2dds:B, 2dds:C, 2dds:D, 2ddt:A, 2ddt:B
2 3i46:A 289 292 0.5903 0.5882 0.5822 3.21e-111 3i46:B
3 3adr:A 259 61 0.0729 0.0811 0.3443 0.18 3adr:B
4 6fv3:D 350 85 0.0729 0.0600 0.2471 0.54
5 6fv4:B 385 85 0.0729 0.0545 0.2471 0.55 6fv3:A, 6fv3:B, 6fv3:C, 6fv4:A
6 8q7x:A 1914 69 0.0764 0.0115 0.3188 1.7
7 8qp8:A 1918 69 0.0764 0.0115 0.3188 1.9
8 6z6g:A 2142 94 0.0868 0.0117 0.2660 2.7 5amr:A
9 6z8k:A 2158 94 0.0868 0.0116 0.2660 2.7 5amq:A, 7orn:A
10 7orm:A 2145 94 0.0868 0.0117 0.2660 2.7
11 6z6b:PPP 2036 94 0.0868 0.0123 0.2660 2.9 6z6b:EEE
12 7oro:A 2008 94 0.0868 0.0125 0.2660 3.1 7ori:A
13 6kz8:A 784 122 0.1007 0.0370 0.2377 4.9 6kz8:B, 6kz9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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