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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DTEIIIGICRKNIPGWKEINESYIEVKQIFSGLTNQLFVVSIVNELKHPRILFRIYGKHVKFYDSKVELDVFRYLSNINI
APNIIADFPEGRIEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSK
NNIDKELYSKILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLLQTQNNIRMIDYEYSAINFAGAD
IANYFCEYIYDYCSEKQPYFKFKYEDYPCEELRKLFISVYLSQTLQEQVMPSQQIVHIMTKAVEVFTLISHITWGLWSIA
VEFDFTEYANTRFTHYLQKKKELIDQGILPLNSWLFN

The query sequence (length=357) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3mes:B 358 359 0.9972 0.9944 0.9916 0.0 3mes:A
2 3c5i:D 355 366 0.3669 0.3690 0.3579 4.41e-63 3c5i:C, 3c5i:A, 3c5i:B
3 6yxs:A 359 362 0.3669 0.3649 0.3619 1.77e-61 3fi8:A, 6yxt:A
4 3lq3:A 339 354 0.3109 0.3274 0.3136 1.28e-45 3feg:A
5 2ckp:A 316 347 0.3109 0.3513 0.3199 5.23e-45
6 8bi5:A 355 358 0.3137 0.3155 0.3128 8.95e-45 7a04:A, 7a04:B, 7a06:A, 5afv:A, 5afv:B, 8bi5:B, 8bi6:A, 8bi6:B, 4br3:A, 4br3:B, 4cg8:A, 4cg9:A, 4cga:A, 2ckq:A, 2ckq:B, 4da5:A, 4da5:B, 5eqe:A, 5eqe:B, 5eqp:A, 5eqp:B, 5eqy:A, 5eqy:B, 3f2r:A, 3f2r:B, 5ftg:A, 5fut:A, 3g15:A, 3g15:B, 7nb1:AAA, 7nb1:BBB, 7nb2:AAA, 7nb2:BBB, 7nb3:AAA, 7nb3:BBB, 5w6o:A, 5w6o:B, 3zm9:A, 3zm9:B
7 1nw1:A 365 356 0.2437 0.2384 0.2444 9.39e-29 1nw1:B
8 8agy:A 346 187 0.1289 0.1329 0.2460 4.41e-04
9 4r78:A 287 145 0.0896 0.1115 0.2207 0.31 4r7b:A, 4r7b:B
10 2xq1:B 494 123 0.0812 0.0587 0.2358 1.3 2xq1:C, 2xq1:D, 2xq1:E, 2xq1:F, 2xq1:G, 2xq1:H, 2xq1:I, 2xq1:J, 2xq1:K, 2xq1:L, 2xq1:M, 2xq1:N, 2xq1:O, 2xq1:P
11 5imt:A 460 79 0.0560 0.0435 0.2532 1.5
12 2pyw:A 417 47 0.0392 0.0336 0.2979 1.8 2pyw:B
13 4r6g:A 464 146 0.0952 0.0733 0.2329 1.8
14 3r75:B 622 47 0.0504 0.0289 0.3830 2.8 3r75:A, 3r76:A, 3r76:B
15 7mq8:SY 238 122 0.0924 0.1387 0.2705 2.8 7mq9:SY, 7mqa:SY
16 3vkh:A 3042 106 0.0812 0.0095 0.2736 2.9
17 3lkk:B 238 80 0.0588 0.0882 0.2625 2.9 3lkk:A, 3ll5:A, 3ll5:B, 3ll5:C, 3ll5:D
18 7xpi:A 363 102 0.0784 0.0771 0.2745 3.6 7ytl:A
19 1eap:A 213 24 0.0308 0.0516 0.4583 5.3 1a0q:L, 5ye3:A, 5ye4:B, 5ye4:D, 6z7y:C, 6z7y:A, 6z7z:C, 6z7z:A
20 1jt2:A 255 73 0.0588 0.0824 0.2877 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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