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BioLiP
>protein
DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1gt0:D 79 79 1.0000 1.0000 1.0000 1.87e-54 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
2 6l6y:D 80 76 0.5949 0.5875 0.6184 1.36e-34 4a3n:A, 3f27:D, 6l6y:F
3 4s2q:D 76 74 0.6076 0.6316 0.6486 2.69e-33 4euw:A
4 2gzk:A 159 73 0.6329 0.3145 0.6849 1.25e-32 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
5 2gzk:A 159 49 0.1899 0.0943 0.3061 0.001 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
6 6t78:A 77 74 0.6076 0.6234 0.6486 2.30e-32 6t78:B, 3u2b:C
7 4y60:C 76 74 0.5443 0.5658 0.5811 1.39e-31
8 7m5w:A 138 72 0.3671 0.2101 0.4028 1.09e-13 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
9 2lef:A 86 71 0.2785 0.2558 0.3099 3.03e-08
10 5jh0:D 157 62 0.2658 0.1338 0.3387 1.54e-06 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
11 5jh0:D 157 55 0.1646 0.0828 0.2364 0.30 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
12 1j5n:A 93 49 0.2152 0.1828 0.3469 3.08e-06
13 1e7j:A 74 46 0.2025 0.2162 0.3478 3.86e-06 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
14 6cik:N 90 49 0.1899 0.1667 0.3061 0.003 6cg0:N, 6cim:N
15 4qr9:A 75 69 0.2785 0.2933 0.3188 0.018 4qr9:B
16 6cij:N 133 38 0.1646 0.0977 0.3421 0.029 5zdz:N, 5ze1:N, 5ze2:N
17 6hb4:A 197 51 0.1519 0.0609 0.2353 0.083 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
18 6hb4:A 197 54 0.2152 0.0863 0.3148 8.4 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
19 7zie:B 185 63 0.3038 0.1297 0.3810 0.16 7zie:A
20 4uii:A 132 35 0.1646 0.0985 0.3714 0.23 4uii:B
21 6zm7:CE 124 33 0.1519 0.0968 0.3636 0.36 8k2c:CE, 8xsy:CE, 6z6l:CE, 6zme:CE
22 4pvi:A 328 36 0.1519 0.0366 0.3333 1.5
23 6oog:A 252 30 0.1266 0.0397 0.3333 3.4
24 6nee:B 252 36 0.1519 0.0476 0.3333 3.9 6nee:A
25 4ff7:A 247 27 0.1139 0.0364 0.3333 7.6 4ff7:B, 7tim:A, 7tim:B, 2ypi:A, 2ypi:B, 3ypi:A, 3ypi:B
26 4v4n:AT 84 28 0.1013 0.0952 0.2857 7.8 4v6u:BT
27 6i9k:A 310 35 0.1519 0.0387 0.3429 9.5
28 1amk:A 250 34 0.1266 0.0400 0.2941 10.0 7abx:A, 7az3:A, 7az4:A, 7az9:A, 7aza:A, 1if2:A, 1n55:A, 1qds:A, 2vxn:A, 2y61:A, 2y62:A, 2y63:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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