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BioLiP
>protein
DRMVMGKIKRIEAGLPLTTAKGRTFGYDVIDTKLYINEEEAKQLRLIYDIFEEEQSITFLQKRLKKLGFKVRTYNRYNNW
LTNDLYCGYVSYKDKVHVKGIHEPIISEEQFYRVQEIFSRMGKNPNMNKESASLLNNLVVCSKCGLGFVHRRKDTVSRGK
KYHYRYYSCKTYKHTHELEKCGNKIWRADKLEELIIDRVNNYLEFREKQLYLKSLINKIYIDGEQVTIEWL

The query sequence (length=231) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4kis:D 287 278 1.0000 0.8049 0.8309 8.82e-165
2 4kis:A 315 202 0.8745 0.6413 1.0000 5.05e-151 6dnw:A, 4kis:B, 4kis:C
3 4kis:A 315 31 0.1299 0.0952 0.9677 1.66e-11 6dnw:A, 4kis:B, 4kis:C
4 9bts:a 154 97 0.1126 0.1688 0.2680 0.46 9bts:b, 9bts:c, 9bts:d, 9bts:e, 9bts:f, 9bts:g, 9bts:h
5 4hct:A 265 57 0.0736 0.0642 0.2982 1.8 4hcu:A, 4hcv:A, 4kio:C, 4l7s:A, 4l7s:B, 4m0y:A, 4m0z:A, 4m12:A, 4m13:A, 4m14:A, 4m15:A, 4mf1:B, 3mj2:A, 4pp9:A, 4pp9:B, 4pqn:A, 3qgw:A, 3qgw:B, 3qgy:A, 3qgy:B, 4rfm:A, 1sm2:A, 1sm2:B, 1snu:A, 1snu:B, 3t9t:A, 3v5l:C, 3v5l:D, 3v8t:B
6 4a4a:A 886 43 0.0693 0.0181 0.3721 3.5 7mfk:A, 7mfl:A, 2vc9:A, 2vca:A, 2vcb:A, 2vcc:A
7 4r7y:A 591 57 0.0693 0.0271 0.2807 7.0 4r7y:B, 4r7z:A, 4r7z:B, 4r7z:C, 4r7z:D, 4r7z:E, 4r7z:F, 4r7z:G, 4r7z:H, 4r7z:I, 4r7z:P, 4r7z:J, 4r7z:K, 4r7z:L, 4r7z:M, 4r7z:N, 4r7z:O
8 7pao:9 682 38 0.0649 0.0220 0.3947 7.4 7paq:9, 7par:9, 7pib:9, 7pis:9, 7pit:9
9 6wot:A 4197 71 0.0909 0.0050 0.2958 8.0 6wot:B, 6wot:C, 6wot:D
10 7tzc:A 4404 86 0.1039 0.0054 0.2791 8.0 3rqr:A, 8sen:A, 8sen:B, 8sen:C, 8sen:D, 8seo:A, 8seo:B, 8seo:C, 8seo:D, 8sep:A, 8sep:B, 8sep:C, 8sep:D, 8seq:A, 8seq:B, 8seq:C, 8seq:D, 8ser:A, 8ser:B, 8ser:C, 8ser:D, 8ses:A, 8ses:B, 8ses:C, 8ses:D, 8set:A, 8set:B, 8set:C, 8set:D, 7tzc:B, 7tzc:G, 7tzc:I
11 1f7u:A 606 36 0.0519 0.0198 0.3333 8.6 1bs2:A, 1f7v:A
12 8h7g:K 352 63 0.0779 0.0511 0.2857 8.7
13 6xtx:3 608 47 0.0519 0.0197 0.2553 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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