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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL
QCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSEL
SKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQL
KDTTFAQVLKDDTTTKRWLAQLVKNLQE

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hom:A 273 268 0.9963 0.9780 0.9963 0.0 4crv:B, 4ct7:B, 2fv2:A, 2fv2:C, 6hom:C, 6hon:A, 6hon:C, 5lsw:A, 5lsw:C, 5ona:B, 5ona:E, 5onb:A, 5onb:C, 5onb:E, 5onb:G
2 4cv5:B 260 265 0.6082 0.6269 0.6151 2.62e-112
3 2v95:A 342 68 0.0858 0.0673 0.3382 0.75
4 3ps5:A 529 59 0.0672 0.0340 0.3051 3.1 1fpr:A, 4gry:A, 4grz:A, 4gs0:B, 4hjq:A, 4hjq:B
5 3jb9:B 904 30 0.0448 0.0133 0.4000 5.2
6 7n8n:A 197 66 0.0709 0.0964 0.2879 5.8 7lv8:B, 7lv8:A, 7lv8:F, 7lv8:E, 7lv9:B, 7lv9:A, 7lv9:F, 7lv9:E, 7n8n:C
7 6xf9:D 426 75 0.0784 0.0493 0.2800 8.2 6xf9:A, 6xf9:B, 6xf9:C, 6xf9:E
8 8btd:SG 238 30 0.0410 0.0462 0.3667 8.6 8brm:SG, 8bsi:SG, 8bsj:SG, 8btr:SG
9 8fvy:G 216 30 0.0410 0.0509 0.3667 9.0 8br8:SG, 8g4s:G, 7pwf:G, 7pwo:G1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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