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BioLiP
>protein
DQCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIG
EWHCQPLQTYP

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ejh:A 91 91 1.0000 1.0000 1.0000 3.21e-65 3ejh:B, 3gxe:B, 3gxe:A
2 3m7p:A 301 89 0.8791 0.2658 0.8989 2.12e-52
3 3m7p:A 301 42 0.1319 0.0399 0.2857 10.0
4 2rky:C 92 79 0.3626 0.3587 0.4177 6.10e-16 2rky:A, 2rl0:A, 2rl0:B, 2rl0:D, 2rl0:F, 2rl0:K
5 2rky:C 92 45 0.1758 0.1739 0.3556 0.021 2rky:A, 2rl0:A, 2rl0:B, 2rl0:D, 2rl0:F, 2rl0:K
6 2rl0:I 79 78 0.3407 0.3924 0.3974 2.23e-14
7 2rl0:I 79 44 0.1758 0.2025 0.3636 0.036
8 2rkz:C 90 81 0.3516 0.3556 0.3951 1.16e-13 3cal:A, 3cal:C, 4pz5:A, 2rkz:A, 2rkz:B, 2rkz:D, 2rkz:E, 2rkz:F, 3zrz:A, 3zrz:B
9 2rkz:C 90 41 0.1538 0.1556 0.3415 0.048 3cal:A, 3cal:C, 4pz5:A, 2rkz:A, 2rkz:B, 2rkz:D, 2rkz:E, 2rkz:F, 3zrz:A, 3zrz:B
10 1o9a:A 93 65 0.2527 0.2473 0.3538 3.76e-06
11 1o9a:A 93 37 0.1538 0.1505 0.3784 0.052
12 1o9a:A 93 31 0.1319 0.1290 0.3871 8.3
13 2xfg:A 446 50 0.1538 0.0314 0.2800 0.26
14 1iaw:A 304 65 0.1978 0.0592 0.2769 0.66 1iaw:B
15 5xfo:A 315 31 0.1429 0.0413 0.4194 3.0 8h43:A, 8h43:B, 8h43:C, 4hcz:A, 4hcz:B, 7lky:B, 7lky:H, 7lky:A, 7lky:C, 7lky:D, 7lky:E, 7lky:F, 7lky:G, 6wat:AA, 6wat:AC, 6wat:BA, 6wat:BC, 6wat:CA, 6wat:CC, 6wat:DA, 6wat:DC, 6wat:EC, 6wat:EA, 6wat:FA, 6wat:FC, 6wat:GA, 6wat:GC, 6wat:HA, 6wat:HC, 6wat:IA, 6wat:IC, 6wat:JA, 6wat:JC, 6wat:KA, 6wat:KC, 6wat:OC, 6wat:LA, 6wat:LC, 6wat:MA, 6wat:MC, 6wat:NA, 6wat:NC, 6wat:OA, 6wav:A, 6wav:C, 6wav:B, 6wav:D, 5xfn:A, 5xfp:B, 5xfp:A, 5xfp:E, 5xfq:A, 5xfq:B
16 3nhe:A 338 17 0.0989 0.0266 0.5294 4.1 6dgf:A, 2ibi:A, 3v6c:A, 3v6e:A, 5xu8:A, 5xve:A
17 2hd5:A 315 17 0.0989 0.0286 0.5294 4.1
18 2obx:A 150 50 0.1758 0.1067 0.3200 5.2 2obx:E, 2obx:B, 2obx:C, 2obx:D, 2obx:F, 2obx:J, 2obx:G, 2obx:H, 2obx:I
19 3hxg:A 183 36 0.1319 0.0656 0.3333 6.6 3hxi:A
20 6q8y:z 874 58 0.1868 0.0195 0.2931 8.4
21 4dod:A 454 50 0.1648 0.0330 0.3000 9.9 4doe:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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