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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMDSYYDYICIIDFEATCEEGNPPEFVH
EIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLT
DGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQD
GCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFR

The query sequence (length=276) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1zbu:B 304 283 0.9855 0.8947 0.9611 0.0 4l8r:B, 4l8r:E, 4qoz:B, 4qoz:E, 1w0h:A, 1zbh:A, 1zbh:D, 1zbh:B, 1zbh:C, 1zbu:A, 1zbu:C, 1zbu:D
2 2xri:A 206 190 0.2826 0.3786 0.4105 4.93e-40 7k05:A, 7k05:B, 7k06:A, 7k06:B, 7k07:A, 7k07:B, 7lpy:A, 7lpy:B, 7lpz:A, 7lpz:B, 7lq0:A, 7lq0:B
3 7n8w:A 214 210 0.2681 0.3458 0.3524 3.28e-39 7n8w:B
4 3cg7:A 296 202 0.2283 0.2128 0.3119 2.85e-23 3cg7:B, 3cm5:A, 3cm5:B, 3cm6:A, 3cm6:B, 5dk5:A, 5dk5:B
5 5nly:B 351 104 0.0978 0.0769 0.2596 0.043 6fne:A
6 6cxh:A 382 74 0.0797 0.0576 0.2973 1.6 7s4l:A, 7s4l:D, 7s4l:E
7 3efo:B 767 45 0.0507 0.0183 0.3111 5.6 3eg9:B, 5kyu:B, 5kyw:B, 5kyx:B, 5kyy:B
8 7og0:B 498 82 0.0906 0.0502 0.3049 6.4 7ofw:A, 7ofz:A, 7og0:A
9 5z79:B 562 135 0.1341 0.0658 0.2741 6.7
10 6rxu:UT 2033 58 0.0688 0.0093 0.3276 7.6 6rxv:UT, 6rxx:UT, 6rxz:UT
11 5z79:C 599 135 0.1341 0.0618 0.2741 7.8 5z79:A, 5z79:D, 5z79:E, 5z79:F
12 4cvh:A 391 65 0.0616 0.0435 0.2615 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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